Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC23.8■■□□□ 1.4
RC3H1Q5TC82 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.79■■□□□ 1.4
RC3H1Q5TC82 PBK-203ENST00000522944 1499 ntTSL 2 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.79■■□□□ 1.4
RC3H1Q5TC82 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RC3H1Q5TC82 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 TSPY12P-201ENST00000421279 868 ntBASIC23.78■■□□□ 1.4
RC3H1Q5TC82 SAPCD2P3-201ENST00000455031 850 ntBASIC23.78■■□□□ 1.4
RC3H1Q5TC82 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 AL592071.1-201ENST00000611956 408 ntBASIC23.78■■□□□ 1.4
RC3H1Q5TC82 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 REXO1L6P-202ENST00000619970 1078 ntBASIC23.78■■□□□ 1.4
RC3H1Q5TC82 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
RC3H1Q5TC82 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 KRT8P32-201ENST00000512863 1461 ntBASIC23.77■■□□□ 1.4
RC3H1Q5TC82 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 GUSBP12-201ENST00000513727 720 ntBASIC23.77■■□□□ 1.4
RC3H1Q5TC82 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RC3H1Q5TC82 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 TEX21P-204ENST00000641479 1693 ntBASIC23.76■■□□□ 1.39
RC3H1Q5TC82 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 AP000593.1-201ENST00000393668 712 ntBASIC23.76■■□□□ 1.39
RC3H1Q5TC82 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 RNA5SP419-201ENST00000515908 135 ntBASIC23.76■■□□□ 1.39
RC3H1Q5TC82 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
RC3H1Q5TC82 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 AC024563.2-201ENST00000603282 481 ntBASIC23.75■■□□□ 1.39
RC3H1Q5TC82 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
RC3H1Q5TC82 AC124864.1-201ENST00000623408 392 ntBASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms