Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A3P12111 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A3P12111 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A3P12111 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.72■□□□□ 0.75
COL6A3P12111 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL6A3P12111 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A3P12111 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL6A3P12111 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL6A3P12111 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL6A3P12111 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.72■□□□□ 0.75
COL6A3P12111 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.72■□□□□ 0.75
COL6A3P12111 AC079834.2-201ENST00000609776 1949 ntBASIC19.72■□□□□ 0.75
COL6A3P12111 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.72■□□□□ 0.75
COL6A3P12111 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
COL6A3P12111 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
COL6A3P12111 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.71■□□□□ 0.75
COL6A3P12111 POM121L3P-201ENST00000419331 1163 ntBASIC19.71■□□□□ 0.75
COL6A3P12111 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.71■□□□□ 0.75
COL6A3P12111 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.71■□□□□ 0.75
COL6A3P12111 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A3P12111 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 SIGLEC30P-201ENST00000455569 941 ntBASIC19.71■□□□□ 0.75
COL6A3P12111 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A3P12111 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.71■□□□□ 0.75
COL6A3P12111 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.71■□□□□ 0.75
COL6A3P12111 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL6A3P12111 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.71■□□□□ 0.75
COL6A3P12111 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 MIR4745-201ENST00000577608 62 ntBASIC19.71■□□□□ 0.75
COL6A3P12111 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL6A3P12111 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL6A3P12111 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A3P12111 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
COL6A3P12111 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.7■□□□□ 0.74
COL6A3P12111 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL6A3P12111 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.7■□□□□ 0.74
COL6A3P12111 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.7■□□□□ 0.74
COL6A3P12111 KRT8P3-201ENST00000519669 1449 ntBASIC19.7■□□□□ 0.74
COL6A3P12111 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL6A3P12111 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A3P12111 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A3P12111 UNC93B6-202ENST00000528242 690 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 AC087641.1-201ENST00000557561 1021 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 DPP3P2-201ENST00000416030 1696 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A3P12111 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A3P12111 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL6A3P12111 AC092910.1-201ENST00000482027 1129 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A3P12111 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A3P12111 MIR6752-201ENST00000618442 71 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 AJ011932.1-201ENST00000621707 465 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 AL162377.1-201ENST00000618844 1793 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A3P12111 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.69■□□□□ 0.74
COL6A3P12111 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL6A3P12111 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.69■□□□□ 0.74
COL6A3P12111 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.69■□□□□ 0.74
COL6A3P12111 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A3P12111 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 MCCD1P2-201ENST00000423228 335 ntBASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms