Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 AC093503.3-201ENST00000624917 2352 ntBASIC18.11■□□□□ 0.49
SEMA3DO95025 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.11■□□□□ 0.49
SEMA3DO95025 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SEMA3DO95025 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SEMA3DO95025 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SEMA3DO95025 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 FSCN1P1-201ENST00000568912 1481 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.1■□□□□ 0.49
SEMA3DO95025 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.1■□□□□ 0.49
SEMA3DO95025 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 RPS2P55-201ENST00000397318 883 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 FAM197Y1-201ENST00000421178 764 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 AC107956.1-201ENST00000494359 873 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.1■□□□□ 0.49
SEMA3DO95025 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.1■□□□□ 0.49
SEMA3DO95025 AC233702.5-201ENST00000584107 538 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.1■□□□□ 0.49
SEMA3DO95025 CD177P1-201ENST00000606252 935 ntBASIC18.1■□□□□ 0.49
SEMA3DO95025 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.1■□□□□ 0.49
SEMA3DO95025 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SEMA3DO95025 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SEMA3DO95025 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.1■□□□□ 0.49
SEMA3DO95025 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SEMA3DO95025 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
SEMA3DO95025 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.09■□□□□ 0.49
SEMA3DO95025 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SEMA3DO95025 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SEMA3DO95025 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SEMA3DO95025 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.09■□□□□ 0.49
SEMA3DO95025 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.09■□□□□ 0.49
SEMA3DO95025 FAM207BP-201ENST00000447172 505 ntBASIC18.09■□□□□ 0.49
SEMA3DO95025 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.09■□□□□ 0.49
SEMA3DO95025 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SEMA3DO95025 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 NEFHP1-201ENST00000412845 2629 ntBASIC18.09■□□□□ 0.49
SEMA3DO95025 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SEMA3DO95025 AC005082.1-201ENST00000413042 2259 ntBASIC18.09■□□□□ 0.49
SEMA3DO95025 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SEMA3DO95025 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SEMA3DO95025 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SEMA3DO95025 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SEMA3DO95025 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SEMA3DO95025 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
SEMA3DO95025 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SEMA3DO95025 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.08■□□□□ 0.48
SEMA3DO95025 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SEMA3DO95025 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SEMA3DO95025 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.08■□□□□ 0.48
SEMA3DO95025 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.08■□□□□ 0.48
SEMA3DO95025 AC011506.1-201ENST00000474329 610 ntBASIC18.08■□□□□ 0.48
SEMA3DO95025 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.08■□□□□ 0.48
SEMA3DO95025 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.08■□□□□ 0.48
SEMA3DO95025 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.08■□□□□ 0.48
SEMA3DO95025 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.08■□□□□ 0.48
SEMA3DO95025 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.08■□□□□ 0.48
SEMA3DO95025 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.08■□□□□ 0.48
SEMA3DO95025 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
SEMA3DO95025 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SEMA3DO95025 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SEMA3DO95025 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.07■□□□□ 0.48
SEMA3DO95025 AL138781.2-201ENST00000617896 1843 ntBASIC18.07■□□□□ 0.48
SEMA3DO95025 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
SEMA3DO95025 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms