Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRAV40A0A0B4J280 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 GPAT2P1-201ENST00000444924 1672 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AL031133.1-201ENST00000406807 723 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AL671277.2-201ENST00000458060 996 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AC008622.2-201ENST00000617006 1229 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AL358472.4-201ENST00000633140 710 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 AC036111.1-201ENST00000533973 1582 ntBASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRAV40A0A0B4J280 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 CLN6-204ENST00000564752 900 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AC091076.1-201ENST00000610741 619 ntBASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV40A0A0B4J280 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 MCCD1P1-208ENST00000445732 328 ntBASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.37■□□□□ 0.05
TRAV40A0A0B4J280 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms