Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 Y_RNA.298-201ENST00000364960 107 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 RNU6-805P-201ENST00000365643 106 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.547-201ENST00000384654 119 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 RPL21P3-201ENST00000395517 478 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 SNRPGP14-201ENST00000435400 219 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 SNORA74D-201ENST00000516404 141 ntBASIC3.28□□□□□ -1.88
USP3Q9Y6I4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
USP3Q9Y6I4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.28□□□□□ -1.89
USP3Q9Y6I4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.27□□□□□ -1.89
USP3Q9Y6I4 RNA5SP383-201ENST00000362934 120 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 Y_RNA.440-201ENST00000384120 114 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 SNORA54-201ENST00000384281 123 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 SNORD15B-201ENST00000384714 146 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 RNU6-220P-201ENST00000390919 107 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 U8.17-201ENST00000391292 132 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 AL627390.1-201ENST00000396055 340 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.27□□□□□ -1.89
USP3Q9Y6I4 RN7SL297P-201ENST00000483161 293 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 RNA5SP217-201ENST00000515959 91 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 AC068339.1-201ENST00000526965 141 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 MIR3683-201ENST00000580847 82 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 MIR3163-201ENST00000581592 73 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 MIR4325-201ENST00000583049 90 ntBASIC3.27□□□□□ -1.89
USP3Q9Y6I4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.27□□□□□ -1.89
USP3Q9Y6I4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.27□□□□□ -1.89
USP3Q9Y6I4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
USP3Q9Y6I4 SNORD73B-201ENST00000364394 72 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 RN7SKP220-201ENST00000410611 288 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.26□□□□□ -1.89
USP3Q9Y6I4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.26□□□□□ -1.89
USP3Q9Y6I4 AL163195.1-201ENST00000496941 348 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 AC008885.1-201ENST00000514930 301 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 SNORD45.4-201ENST00000516629 73 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 SNORA50A-202ENST00000629536 136 ntBASIC3.26□□□□□ -1.89
USP3Q9Y6I4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP3Q9Y6I4 SNORA11.4-201ENST00000408823 129 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 RPS3AP1-201ENST00000413190 320 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 AC104332.2-201ENST00000429959 156 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 RNU7-164P-201ENST00000459221 62 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 S100A11P2-201ENST00000467589 312 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 RN7SKP43-201ENST00000516173 320 ntBASIC3.25□□□□□ -1.89
USP3Q9Y6I4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.25□□□□□ -1.89
USP3Q9Y6I4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
USP3Q9Y6I4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.24□□□□□ -1.89
USP3Q9Y6I4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP3Q9Y6I4 SNORA80E-201ENST00000384744 137 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 MIR548D2-201ENST00000384955 97 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 MIR483-201ENST00000385070 76 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 AC009238.1-201ENST00000442165 424 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 AC009237.6-201ENST00000446969 424 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 SNORA18.7-201ENST00000516910 131 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 AP003484.1-201ENST00000530974 250 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 AC084364.2-201ENST00000546924 395 ntBASIC3.24□□□□□ -1.89
USP3Q9Y6I4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP3Q9Y6I4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP3Q9Y6I4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 AC093010.3-201ENST00000570269 15214 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 MIR422A-201ENST00000362286 90 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 SNORA33-201ENST00000363664 130 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 SNORD114-6-201ENST00000364393 72 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 RNU6-440P-201ENST00000390882 105 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 SNORA48.2-201ENST00000390926 124 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 SUMO2P16-201ENST00000519475 264 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 MIR4305-201ENST00000583252 102 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 MIR7153-201ENST00000637758 57 ntBASIC3.23□□□□□ -1.89
USP3Q9Y6I4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
USP3Q9Y6I4 AC073325.2-201ENST00000339545 159 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 Y_RNA.220-201ENST00000364244 109 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORD21-201ENST00000383953 95 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORD38C-201ENST00000384381 69 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 RNU6-1072P-201ENST00000384703 107 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 RNU6-443P-201ENST00000384780 107 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORD67-201ENST00000390833 111 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORA26.2-201ENST00000390922 122 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 AC245047.3-201ENST00000429428 127 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.22□□□□□ -1.89
USP3Q9Y6I4 AL109933.2-201ENST00000452651 260 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 RNA5SP341-201ENST00000516261 117 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 RNU6-830P-201ENST00000516353 107 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORD36C-201ENST00000516733 66 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 AC005000.2-201ENST00000605468 310 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 SNORA28-201ENST00000606769 126 ntBASIC3.22□□□□□ -1.89
USP3Q9Y6I4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP3Q9Y6I4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USP3Q9Y6I4 Y_RNA.265-201ENST00000364677 108 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 RNU6-1131P-201ENST00000364955 107 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 Y_RNA.351-201ENST00000365436 96 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 SNORA51.10-201ENST00000384418 136 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms