Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC010297.1-201ENST00000623948 149 ntBASIC2.9□□□□□ -1.95
LIG3P49916 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
LIG3P49916 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
LIG3P49916 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.9□□□□□ -1.95
LIG3P49916 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
LIG3P49916 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
LIG3P49916 AC096644.4-201ENST00000563417 2912 ntBASIC2.89□□□□□ -1.95
LIG3P49916 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.89□□□□□ -1.95
LIG3P49916 RNU6-1290P-201ENST00000362957 109 ntBASIC2.89□□□□□ -1.95
LIG3P49916 MIR634-201ENST00000385208 97 ntBASIC2.89□□□□□ -1.95
LIG3P49916 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.89□□□□□ -1.95
LIG3P49916 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.89□□□□□ -1.95
LIG3P49916 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.89□□□□□ -1.95
LIG3P49916 AC131055.1-201ENST00000584626 316 ntBASIC2.89□□□□□ -1.95
LIG3P49916 MIR7106-201ENST00000612419 65 ntBASIC2.89□□□□□ -1.95
LIG3P49916 CTSLP2-204ENST00000629029 392 ntBASIC2.89□□□□□ -1.95
LIG3P49916 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LIG3P49916 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LIG3P49916 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.88□□□□□ -1.95
LIG3P49916 Y_RNA.66-201ENST00000362862 102 ntBASIC2.88□□□□□ -1.95
LIG3P49916 SNORD50B-201ENST00000364995 70 ntBASIC2.88□□□□□ -1.95
LIG3P49916 RNU6-735P-201ENST00000410612 107 ntBASIC2.88□□□□□ -1.95
LIG3P49916 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.88□□□□□ -1.95
LIG3P49916 SNORA18.4-201ENST00000516440 124 ntBASIC2.88□□□□□ -1.95
LIG3P49916 RNA5SP367-201ENST00000516557 118 ntBASIC2.88□□□□□ -1.95
LIG3P49916 RNU6-1234P-201ENST00000516877 103 ntBASIC2.88□□□□□ -1.95
LIG3P49916 AL365205.2-201ENST00000594586 68 ntBASIC2.88□□□□□ -1.95
LIG3P49916 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.88□□□□□ -1.95
LIG3P49916 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
LIG3P49916 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIG3P49916 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
LIG3P49916 Y_RNA.261-201ENST00000364631 102 ntBASIC2.87□□□□□ -1.95
LIG3P49916 RNA5SP205-201ENST00000364653 136 ntBASIC2.87□□□□□ -1.95
LIG3P49916 MIR522-201ENST00000385071 87 ntBASIC2.87□□□□□ -1.95
LIG3P49916 MIR802-201ENST00000390235 94 ntBASIC2.87□□□□□ -1.95
LIG3P49916 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
LIG3P49916 SNORD72-201ENST00000390994 80 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AC245047.3-201ENST00000429428 127 ntBASIC2.87□□□□□ -1.95
LIG3P49916 FTH1P12-201ENST00000432137 551 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.87□□□□□ -1.95
LIG3P49916 RNU4-57P-201ENST00000515980 135 ntBASIC2.87□□□□□ -1.95
LIG3P49916 RNA5SP137-201ENST00000516833 135 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.87□□□□□ -1.95
LIG3P49916 Y_RNA.757-201ENST00000578934 114 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AC022217.4-201ENST00000604389 163 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AC069114.2-201ENST00000604699 304 ntBASIC2.87□□□□□ -1.95
LIG3P49916 AC022513.1-201ENST00000624512 117 ntBASIC2.87□□□□□ -1.95
LIG3P49916 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.87□□□□□ -1.95
LIG3P49916 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
LIG3P49916 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.86□□□□□ -1.95
LIG3P49916 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.86□□□□□ -1.95
LIG3P49916 SNORD68-201ENST00000363214 84 ntBASIC2.86□□□□□ -1.95
LIG3P49916 Y_RNA.120-201ENST00000363304 110 ntBASIC2.86□□□□□ -1.95
LIG3P49916 RNA5SP127-201ENST00000411051 133 ntBASIC2.86□□□□□ -1.95
LIG3P49916 Y_RNA.629-201ENST00000411368 105 ntBASIC2.86□□□□□ -1.95
LIG3P49916 BX510359.4-201ENST00000423750 193 ntBASIC2.86□□□□□ -1.95
LIG3P49916 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.86□□□□□ -1.95
LIG3P49916 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.86□□□□□ -1.95
LIG3P49916 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.86□□□□□ -1.95
LIG3P49916 AC007751.1-201ENST00000529260 376 ntBASIC2.86□□□□□ -1.95
LIG3P49916 AC091544.4-201ENST00000555268 342 ntBASIC2.86□□□□□ -1.95
LIG3P49916 AL359881.1-201ENST00000602916 267 ntBASIC2.86□□□□□ -1.95
LIG3P49916 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.85□□□□□ -1.95
LIG3P49916 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.85□□□□□ -1.95
LIG3P49916 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
LIG3P49916 U8.1-201ENST00000362843 134 ntBASIC2.85□□□□□ -1.95
LIG3P49916 SNORD18B-201ENST00000365659 72 ntBASIC2.85□□□□□ -1.95
LIG3P49916 SNORD24-201ENST00000383884 75 ntBASIC2.85□□□□□ -1.95
LIG3P49916 MIR624-201ENST00000385217 97 ntBASIC2.85□□□□□ -1.95
LIG3P49916 RNA5SP181-201ENST00000410246 98 ntBASIC2.85□□□□□ -1.95
LIG3P49916 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.85□□□□□ -1.95
LIG3P49916 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.85□□□□□ -1.95
LIG3P49916 Y_RNA.692-201ENST00000516627 105 ntBASIC2.85□□□□□ -1.95
LIG3P49916 RPPH1-2P-201ENST00000516688 293 ntBASIC2.85□□□□□ -1.95
LIG3P49916 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.85□□□□□ -1.95
LIG3P49916 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.85□□□□□ -1.95
LIG3P49916 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
LIG3P49916 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.84□□□□□ -1.95
LIG3P49916 RNU1-109P-201ENST00000383960 147 ntBASIC2.84□□□□□ -1.95
LIG3P49916 RNA5SP482-201ENST00000391269 118 ntBASIC2.84□□□□□ -1.95
LIG3P49916 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.84□□□□□ -1.95
LIG3P49916 SNORA9.3-201ENST00000516383 129 ntBASIC2.84□□□□□ -1.95
LIG3P49916 RNU1-104P-201ENST00000517280 175 ntBASIC2.84□□□□□ -1.95
LIG3P49916 GTF3AP2-201ENST00000557014 266 ntBASIC2.84□□□□□ -1.95
LIG3P49916 ELOCP29-201ENST00000588193 334 ntBASIC2.84□□□□□ -1.95
LIG3P49916 SCARNA15.3-201ENST00000626315 122 ntBASIC2.84□□□□□ -1.95
LIG3P49916 SCARNA4.1-201ENST00000628597 123 ntBASIC2.84□□□□□ -1.95
LIG3P49916 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
LIG3P49916 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.83□□□□□ -1.96
LIG3P49916 MIR6073-201ENST00000352083 89 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RNU6-888P-201ENST00000363010 101 ntBASIC2.83□□□□□ -1.96
LIG3P49916 SNORA5B-201ENST00000363786 132 ntBASIC2.83□□□□□ -1.96
LIG3P49916 RNU6-1019P-201ENST00000364424 107 ntBASIC2.83□□□□□ -1.96
LIG3P49916 U8.5-201ENST00000364528 136 ntBASIC2.83□□□□□ -1.96
LIG3P49916 Y_RNA.265-201ENST00000364677 108 ntBASIC2.83□□□□□ -1.96
LIG3P49916 MIR512-1-201ENST00000384913 84 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AC087499.2-201ENST00000432861 149 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AC105272.1-201ENST00000438604 198 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AC069257.2-201ENST00000441819 155 ntBASIC2.83□□□□□ -1.96
LIG3P49916 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms