Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 Z94722.1-201ENST00000604328 474 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 AC026741.1-201ENST00000605892 482 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 AC068137.4-201ENST00000638485 296 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 RNU6-1115P-201ENST00000362490 106 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 Y_RNA.46-201ENST00000362695 102 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 SNORD50B-201ENST00000364995 70 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 RNU4-66P-201ENST00000365199 138 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 MIR518F-201ENST00000384973 87 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 SNORD64-201ENST00000386683 67 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 RNU6-1165P-201ENST00000410119 107 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 RNU6-387P-201ENST00000411331 105 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 SSR1P2-201ENST00000415208 787 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 snoU13.2-201ENST00000459201 104 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 AC091959.1-201ENST00000495857 238 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 AC079140.5-201ENST00000507882 310 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 RNU6-830P-201ENST00000516353 107 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 RNU6-685P-201ENST00000517088 95 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 MIR7844-201ENST00000616161 122 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 MIR8066-201ENST00000617280 78 ntBASIC-1.35□□□□□ -2.63
CUX1P39880 SNORA20B-201ENST00000384220 132 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 Y_RNA.490-201ENST00000384413 102 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 MIR522-201ENST00000385071 87 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 SNORD93-201ENST00000408813 74 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-1.36□□□□□ -2.63
CUX1P39880 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-1.36□□□□□ -2.63
CUX1P39880 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.36□□□□□ -2.63
CUX1P39880 AC127459.3-201ENST00000624328 466 ntBASIC-1.36□□□□□ -2.63
CUX1P39880 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 RNU6-560P-201ENST00000364007 108 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 RNU6-1336P-201ENST00000383886 109 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 RNU6-455P-201ENST00000384681 107 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 MIR588-201ENST00000384900 83 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 AL117351.1-201ENST00000438864 766 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 RNU2-13P-201ENST00000515909 113 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 RNU6-1003P-201ENST00000517099 105 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 MTND1P5-201ENST00000517906 940 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 MTND4P33-201ENST00000556706 766 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 AL445984.1-201ENST00000637834 659 ntBASIC-1.37□□□□□ -2.63
CUX1P39880 MTND5P18-201ENST00000445624 1801 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 RNU6-431P-201ENST00000383874 107 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 Y_RNA.428-201ENST00000384078 102 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 SNORA1-201ENST00000384107 130 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 MTCYBP4-201ENST00000401524 249 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 RNU6-847P-201ENST00000411115 108 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 AC011352.1-201ENST00000512300 793 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 POLR3GP1-201ENST00000594073 261 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-1.38□□□□□ -2.63
CUX1P39880 AC073869.9-201ENST00000641610 120 ntBASIC-1.38□□□□□ -2.63
CUX1P39880 RNU6-354P-201ENST00000383862 107 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 RNU6-610P-201ENST00000384264 107 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 SNORD38C-201ENST00000384381 69 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 MIR517B-201ENST00000385102 67 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 RNA5SP261-201ENST00000410536 106 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 RNU4-83P-201ENST00000410863 133 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.39□□□□□ -2.63
CUX1P39880 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-1.39□□□□□ -2.63
CUX1P39880 RNU6-1198P-201ENST00000516904 67 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 AC013437.2-201ENST00000639587 677 ntBASIC-1.39□□□□□ -2.63
CUX1P39880 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU6-1286P-201ENST00000383871 107 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MT-TF-201ENST00000387314 71 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU2-8P-201ENST00000410727 190 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 SNORA13-201ENST00000458790 133 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 SNORA25.14-201ENST00000516481 132 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR8055-201ENST00000610739 97 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR382-201ENST00000637119 76 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-1.4□□□□□ -2.63
CUX1P39880 Y_RNA.6-201ENST00000362350 114 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 Y_RNA.32-201ENST00000362589 110 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU6-324P-201ENST00000363957 106 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU6-407P-201ENST00000365280 104 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU6-535P-201ENST00000384722 107 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 RNU6-298P-201ENST00000390888 96 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 SNORD110-201ENST00000408189 75 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MTCO2P27-201ENST00000420740 428 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 HLA-S-202ENST00000425174 53 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 BX276092.1-201ENST00000427368 251 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 ERLEC1P1-201ENST00000433806 578 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 HMGN2P32-201ENST00000444648 269 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-1.4□□□□□ -2.63
CUX1P39880 MTCO3P38-201ENST00000468910 766 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-1.4□□□□□ -2.63
CUX1P39880 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-1.4□□□□□ -2.63
CUX1P39880 MIR3179-1-201ENST00000578940 84 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR3179-2-201ENST00000579107 84 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR3179-3-201ENST00000579566 84 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR8084-201ENST00000614105 89 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR3179-4-201ENST00000617599 84 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 AC009159.2-201ENST00000617603 606 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 MIR1246-201ENST00000636535 73 ntBASIC-1.4□□□□□ -2.63
CUX1P39880 SNORA1.2-201ENST00000365189 134 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 SNORD56B-201ENST00000384713 71 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 Y_RNA.576-201ENST00000384781 102 ntBASIC-1.41□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms