Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
HOXA9P31269 U8.16-201ENST00000391279 133 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 AL354751.2-201ENST00000415471 210 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.95□□□□□ -2.26
HOXA9P31269 SNX2P2-201ENST00000424553 323 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 SUMO1P2-201ENST00000452524 304 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 Y_RNA.661-201ENST00000516003 99 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 RNU6-1278P-201ENST00000516130 107 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 MIR4778-201ENST00000577635 80 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 MIR3664-201ENST00000579074 99 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 AC022441.3-201ENST00000605737 136 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 AC108706.1-201ENST00000611053 297 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 AC106754.2-201ENST00000623006 233 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 SNORD3E-202ENST00000627253 216 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 Y_RNA.197-201ENST00000364004 102 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 RNU4-41P-201ENST00000364426 143 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 Y_RNA.419-201ENST00000384041 102 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 Y_RNA.458-201ENST00000384240 102 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 RNU2-61P-201ENST00000411069 191 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.94□□□□□ -2.26
HOXA9P31269 AL162725.1-201ENST00000435405 301 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 HSPE1P13-201ENST00000451143 297 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 RNU6-1096P-201ENST00000517089 102 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 AC010205.1-201ENST00000616668 449 ntBASIC0.94□□□□□ -2.26
HOXA9P31269 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.93□□□□□ -2.26
HOXA9P31269 Y_RNA.230-201ENST00000364348 109 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU1-115P-201ENST00000365329 160 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 Y_RNA.570-201ENST00000384750 101 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 MIR7-2-201ENST00000384970 110 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC004941.2-201ENST00000427009 228 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 MTND1P14-201ENST00000427400 950 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC093850.1-201ENST00000454121 251 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC233266.1-201ENST00000454518 96 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RPL39P38-201ENST00000467018 153 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AL049830.1-201ENST00000468034 425 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC010655.3-201ENST00000478818 450 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 SNORA25.10-201ENST00000515926 124 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU6-976P-201ENST00000516086 111 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU6-155P-201ENST00000516347 100 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU2-56P-201ENST00000516826 190 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU6-165P-201ENST00000517170 99 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 RNU6-1116P-201ENST00000517269 99 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AP002004.2-201ENST00000531656 154 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AP001094.1-201ENST00000579805 193 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 MIR4423-201ENST00000580922 80 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC006380.1-201ENST00000603598 186 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AL080274.1-201ENST00000605565 220 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AL133255.1-201ENST00000606374 441 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 SNORA28-201ENST00000606769 126 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC242852.1-201ENST00000612151 96 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AC244015.1-201ENST00000622301 99 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 uc_338.22-201ENST00000622722 187 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 AL606534.2-204ENST00000635008 178 ntBASIC0.93□□□□□ -2.26
HOXA9P31269 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
HOXA9P31269 SNORD81.1-201ENST00000363064 77 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 RNU6-1175P-201ENST00000365200 107 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 Y_RNA.509-201ENST00000384506 99 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 MIR520G-201ENST00000385064 90 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 MT-TD-201ENST00000387419 68 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
HOXA9P31269 SNORA40.14-201ENST00000516543 86 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 RNU7-28P-201ENST00000516759 62 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 AL358944.1-201ENST00000528537 144 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 AC007485.1-201ENST00000616755 206 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.92□□□□□ -2.26
HOXA9P31269 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
HOXA9P31269 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
HOXA9P31269 Y_RNA.31-201ENST00000362574 102 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 Y_RNA.39-201ENST00000362620 98 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 RNU4-76P-201ENST00000364509 141 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 RNU1-133P-201ENST00000364867 167 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 Y_RNA.329-201ENST00000365209 107 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 Y_RNA.395-201ENST00000383945 109 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 MIR562-201ENST00000384894 95 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 MIR653-201ENST00000385279 96 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 RNA5SP482-201ENST00000391269 118 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 MTND4LP11-201ENST00000422184 280 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 AL160004.2-201ENST00000432935 350 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.91□□□□□ -2.26
HOXA9P31269 SNORA70.12-201ENST00000516084 153 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 RNU6-917P-201ENST00000516294 104 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 RN7SKP295-201ENST00000517264 153 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 C8orf59P2-201ENST00000603441 271 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 FAM71BP1-201ENST00000604431 523 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 AC004832.4-201ENST00000608952 331 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.91□□□□□ -2.26
HOXA9P31269 AL391516.1-201ENST00000554380 2449 ntBASIC0.91□□□□□ -2.26
HOXA9P31269 MIR369-201ENST00000362155 70 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 RNU6-199P-201ENST00000362954 107 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 RNU6-324P-201ENST00000363957 106 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 SNORD42.2-201ENST00000365570 69 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 SNORD41-201ENST00000386967 70 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 RNU6-130P-201ENST00000411112 103 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.9□□□□□ -2.27
HOXA9P31269 RNU7-12P-201ENST00000516030 62 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 RNU6-922P-201ENST00000516753 99 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
HOXA9P31269 AL513534.2-201ENST00000603836 250 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms