Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
USP43Q70EL4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP43Q70EL4 CENPCP1-201ENST00000533085 2578 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 RNU6-235P-201ENST00000362644 107 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 Y_RNA.229-201ENST00000364347 113 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 Y_RNA.243-201ENST00000364481 109 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 RNU6-1082P-201ENST00000364574 107 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 Y_RNA.368-201ENST00000365547 113 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 SNORA67.2-201ENST00000384300 149 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 MIR320B2-201ENST00000408479 138 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.1□□□□□ -2.07
USP43Q70EL4 AL356320.1-201ENST00000429616 163 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.1□□□□□ -2.07
USP43Q70EL4 RNU6-1007P-201ENST00000516586 107 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.1□□□□□ -2.07
USP43Q70EL4 NDUFA5P6-201ENST00000542110 379 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
USP43Q70EL4 AC079598.5-201ENST00000547460 117 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 AC108081.1-201ENST00000604358 221 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 TCL6_2.1-201ENST00000615162 119 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 AC005562.2-201ENST00000618264 111 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 snoZ196.1-201ENST00000625269 89 ntBASIC2.1□□□□□ -2.07
USP43Q70EL4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
USP43Q70EL4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USP43Q70EL4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USP43Q70EL4 RNU6-1210P-201ENST00000363775 107 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 U3.9-201ENST00000363823 204 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 Y_RNA.287-201ENST00000364853 94 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RNU6-915P-201ENST00000364943 103 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 Y_RNA.393-201ENST00000383936 102 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 MIR15B-201ENST00000385045 98 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 AL031003.1-201ENST00000404229 172 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RNA5SP475-201ENST00000410568 110 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RNU4-43P-201ENST00000410628 137 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RNU4-53P-201ENST00000410828 140 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 CYCSP49-201ENST00000420810 319 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.07
USP43Q70EL4 AL121914.1-201ENST00000450188 156 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 AL441985.1-201ENST00000457727 251 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RPS27P21-201ENST00000486977 252 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.09□□□□□ -2.07
USP43Q70EL4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.09□□□□□ -2.07
USP43Q70EL4 RNU5E-3P-201ENST00000515913 68 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 IGKV3-31-201ENST00000523109 329 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 MIR5688-201ENST00000580619 83 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 MIR6844-201ENST00000637122 62 ntBASIC2.09□□□□□ -2.07
USP43Q70EL4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
USP43Q70EL4 Y_RNA.293-201ENST00000364908 93 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 Y_RNA.369-201ENST00000365568 117 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 RNU1-57P-201ENST00000384491 166 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 MIR147B-201ENST00000390185 80 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 RNU6-1228P-201ENST00000391014 107 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 SNORD37.2-201ENST00000391075 66 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 AL606845.1-201ENST00000404881 255 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
USP43Q70EL4 AC027124.2-201ENST00000428249 105 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 AC004386.2-201ENST00000441858 148 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.08□□□□□ -2.08
USP43Q70EL4 RNU7-141P-201ENST00000459304 62 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 AC145146.1-201ENST00000496370 254 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 RNU6-772P-201ENST00000516042 105 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 SNORD33.1-201ENST00000516213 88 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 Y_RNA.694-201ENST00000516677 117 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.08□□□□□ -2.08
USP43Q70EL4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.08□□□□□ -2.08
USP43Q70EL4 MIR3121-201ENST00000579680 77 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 MIR4769-201ENST00000584126 77 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 SNORD11B-201ENST00000607707 90 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 uc_338.14-201ENST00000613162 166 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 AC068205.3-201ENST00000636385 468 ntBASIC2.08□□□□□ -2.08
USP43Q70EL4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.08□□□□□ -2.08
USP43Q70EL4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.08□□□□□ -2.08
USP43Q70EL4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.08□□□□□ -2.08
USP43Q70EL4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.08□□□□□ -2.08
USP43Q70EL4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
USP43Q70EL4 AC069528.2-201ENST00000624849 1991 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 RNU6-655P-201ENST00000362858 107 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 SNORD87-201ENST00000364849 89 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 RNA5SP138-201ENST00000365098 114 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 SNORA20B-201ENST00000384220 132 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 AL512604.1-201ENST00000404812 257 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 AL158147.1-201ENST00000443970 75 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 AL357134.1-201ENST00000445848 426 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 RNU6-717P-201ENST00000459076 104 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 MTND5P34-201ENST00000568888 325 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 uc_338.20-201ENST00000621563 178 ntBASIC2.07□□□□□ -2.08
USP43Q70EL4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
USP43Q70EL4 Y_RNA.35-201ENST00000362601 101 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 RNU6-324P-201ENST00000363957 106 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 RNU6-597P-201ENST00000365620 102 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 SNORA18.2-201ENST00000383865 132 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 RNU6-1336P-201ENST00000383886 109 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 SNORA75.5-201ENST00000391291 81 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 Z98742.3-201ENST00000418637 326 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 MTCO1P44-201ENST00000441935 243 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 RPS27P1-201ENST00000450552 247 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 SNRPGP8-201ENST00000454064 226 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 499.6 ms