Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RNF43Q68DV7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.21□□□□□ -1.9
RNF43Q68DV7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RNF43Q68DV7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
RNF43Q68DV7 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.21□□□□□ -1.9
RNF43Q68DV7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
RNF43Q68DV7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.2□□□□□ -1.9
RNF43Q68DV7 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.2□□□□□ -1.9
RNF43Q68DV7 AC073325.2-201ENST00000339545 159 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 RNU6-1235P-201ENST00000384559 107 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 SNORD77.3-201ENST00000391113 65 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 RPS12P18-201ENST00000442381 270 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 AC109327.2-201ENST00000448339 378 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF43Q68DV7 RNU6-498P-201ENST00000459468 107 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF43Q68DV7 IGKV3-31-201ENST00000523109 329 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 AC068339.1-201ENST00000526965 141 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 MALAT1.1-201ENST00000618249 95 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 Y_RNA.818-201ENST00000618813 71 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 AC015726.2-201ENST00000620112 122 ntBASIC3.2□□□□□ -1.9
RNF43Q68DV7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
RNF43Q68DV7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF43Q68DV7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
RNF43Q68DV7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
RNF43Q68DV7 MIR494-201ENST00000349529 81 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 RNU6-888P-201ENST00000363010 101 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 RNU6-414P-201ENST00000363705 104 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 RNU6-944P-201ENST00000364023 107 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 RNU6-1152P-201ENST00000384576 107 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
RNF43Q68DV7 SNORD78.1-201ENST00000390866 65 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 AC022018.1-201ENST00000430685 241 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 Y_RNA.666-201ENST00000516187 112 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 RNU6-1146P-201ENST00000516282 102 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 AC141557.1-201ENST00000540982 400 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 GTF3AP2-201ENST00000557014 266 ntBASIC3.19□□□□□ -1.9
RNF43Q68DV7 AC009487.4-201ENST00000624969 3585 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 SNORD24-201ENST00000383884 75 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 Y_RNA.621-201ENST00000411065 96 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 RPS29P21-201ENST00000496272 170 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 RNU6-830P-201ENST00000516353 107 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 RNU6-1096P-201ENST00000517089 102 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 RNU6-158P-201ENST00000517104 100 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 MIR4474-201ENST00000579189 78 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 MIR4435-1-201ENST00000582552 80 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 AC134878.1-201ENST00000619901 243 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 MIR2052-201ENST00000636055 55 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 MIR376A2-201ENST00000636782 80 ntBASIC3.18□□□□□ -1.9
RNF43Q68DV7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
RNF43Q68DV7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
RNF43Q68DV7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
RNF43Q68DV7 RNU6-1274P-201ENST00000384557 107 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 SNORD15B-201ENST00000384714 146 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 MT-TI-201ENST00000387365 69 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.17□□□□□ -1.9
RNF43Q68DV7 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 AP004217.1-201ENST00000480579 346 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 RNU6-693P-201ENST00000516134 107 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 RNY4P20-201ENST00000516678 93 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.17□□□□□ -1.9
RNF43Q68DV7 AC006111.3-201ENST00000622137 383 ntBASIC3.17□□□□□ -1.9
RNF43Q68DV7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
RNF43Q68DV7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
RNF43Q68DV7 AP003122.5-201ENST00000527668 3766 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF43Q68DV7 Y_RNA.78-201ENST00000362970 110 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 RNY1P10-201ENST00000363268 113 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 Y_RNA.213-201ENST00000364178 111 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 Y_RNA.219-201ENST00000364232 113 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 SNORA71.1-201ENST00000364523 117 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 MIR548A2-201ENST00000384956 97 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 MIR591-201ENST00000385290 95 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 PGBD4P5-201ENST00000445958 426 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.16□□□□□ -1.9
RNF43Q68DV7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.16□□□□□ -1.9
RNF43Q68DV7 RPS26P48-201ENST00000491713 339 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 AC091826.1-201ENST00000514065 313 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 RNU6-904P-201ENST00000516206 101 ntBASIC3.16□□□□□ -1.9
RNF43Q68DV7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.16□□□□□ -1.9
RNF43Q68DV7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.16□□□□□ -1.9
RNF43Q68DV7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
RNF43Q68DV7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
RNF43Q68DV7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
RNF43Q68DV7 RNU6-486P-201ENST00000363116 107 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 RNU6-1134P-201ENST00000365156 101 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 Y_RNA.342-201ENST00000365352 113 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 RNU6-438P-201ENST00000365561 103 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 MIR1261-201ENST00000408659 82 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 EEF1A1P41-201ENST00000414667 207 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.15□□□□□ -1.91
RNF43Q68DV7 AC107297.1-201ENST00000459991 176 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.15□□□□□ -1.91
RNF43Q68DV7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 AC026421.1-201ENST00000519101 163 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 AC084364.2-201ENST00000546924 395 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 ELOCP29-201ENST00000588193 334 ntBASIC3.15□□□□□ -1.91
RNF43Q68DV7 AL590808.1-201ENST00000618696 141 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms