Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-117P-201ENST00000365415 107 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 SNORA22-201ENST00000383907 134 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU6-975P-201ENST00000384296 105 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU6-1072P-201ENST00000384703 107 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU6-443P-201ENST00000384780 107 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 MIR300-201ENST00000401138 83 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU2-55P-201ENST00000411146 174 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RN7SKP192-201ENST00000411291 327 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 AC097463.2-201ENST00000421074 142 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 AC063976.4-201ENST00000421971 163 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 Z98742.2-201ENST00000431564 187 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.64□□□□□ -1.99
USP39Q53GS9 AL158147.1-201ENST00000443970 75 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU7-14P-201ENST00000459331 62 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNA5SP20-201ENST00000515976 84 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNA5SP282-201ENST00000516355 108 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNA5SP170-201ENST00000517150 101 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU2-60P-201ENST00000517290 128 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 MTND5P34-201ENST00000568888 325 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 MIR3121-201ENST00000579680 77 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 RPL30P11-203ENST00000598995 310 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USP39Q53GS9 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.63□□□□□ -1.99
USP39Q53GS9 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
USP39Q53GS9 Y_RNA.120-201ENST00000363304 110 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNA5SP393-201ENST00000363423 117 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNU6-944P-201ENST00000364023 107 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNU4-41P-201ENST00000364426 143 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNU6-147P-201ENST00000383983 107 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 MIR29B2-201ENST00000385055 81 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 SNORA3.2-201ENST00000408221 125 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 SNORA79-201ENST00000408376 140 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNA5SP511-201ENST00000410487 115 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.63□□□□□ -1.99
USP39Q53GS9 RPL39P40-201ENST00000445481 146 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 AC016717.1-201ENST00000448918 286 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 SNORD33.1-201ENST00000516213 88 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RNU1-104P-201ENST00000517280 175 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 AC015720.1-201ENST00000565251 277 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 MIR4679-2-201ENST00000578358 77 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 Y_RNA.757-201ENST00000578934 114 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 MIR5194-201ENST00000582634 120 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 AL049861.1-201ENST00000603130 150 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 AC108081.1-201ENST00000604358 221 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 U4.3-201ENST00000621047 82 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 FO624990.1-201ENST00000636373 85 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 MIR4679-1-201ENST00000637619 75 ntBASIC2.63□□□□□ -1.99
USP39Q53GS9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP39Q53GS9 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP39Q53GS9 Z82209.1-201ENST00000422141 2135 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RNU6-508P-201ENST00000363231 103 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 Y_RNA.114-201ENST00000363265 113 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RNU6-1255P-201ENST00000363434 112 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RNU6-1164P-201ENST00000364428 107 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 Y_RNA.432-201ENST00000384087 111 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 MIR27B-201ENST00000385129 97 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RNU6-57P-201ENST00000411348 103 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 AC007064.1-201ENST00000412238 351 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 MLLT10P1-201ENST00000418346 262 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 AL357134.1-201ENST00000445848 426 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 AC090515.1-201ENST00000465295 476 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RNU5E-3P-201ENST00000515913 68 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 SCARNA17.1-201ENST00000516211 143 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 SCARNA17.2-201ENST00000516334 143 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 Y_RNA.692-201ENST00000516627 105 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 AC027419.1-201ENST00000522976 328 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 SCARNA17.4-201ENST00000614296 143 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.62□□□□□ -1.99
USP39Q53GS9 U6.95-201ENST00000636931 70 ntBASIC2.62□□□□□ -1.99
USP39Q53GS9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.62□□□□□ -1.99
USP39Q53GS9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
USP39Q53GS9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.62□□□□□ -1.99
USP39Q53GS9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP39Q53GS9 RNU1-72P-201ENST00000362976 153 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 RNU6-234P-201ENST00000365229 104 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 RNU4-53P-201ENST00000410828 140 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 AC016909.1-201ENST00000415916 166 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.61□□□□□ -1.99
USP39Q53GS9 RNU7-26P-201ENST00000458980 63 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 snoU13.15-201ENST00000459407 104 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 AC025647.1-201ENST00000517879 253 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 MIR4524B-201ENST00000581569 115 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 MIR4753-201ENST00000585119 83 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 AL929325.1-201ENST00000603096 117 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 AC097639.2-201ENST00000603159 172 ntBASIC2.61□□□□□ -1.99
USP39Q53GS9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP39Q53GS9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
USP39Q53GS9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP39Q53GS9 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
USP39Q53GS9 Y_RNA.91-201ENST00000363042 107 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 RNU6-1083P-201ENST00000384022 107 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 RNU6-1274P-201ENST00000384557 107 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 RNA5SP425-201ENST00000410336 112 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 Y_RNA.617-201ENST00000410920 90 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 Z98742.3-201ENST00000418637 326 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.6□□□□□ -1.99
USP39Q53GS9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 RNU6-1299P-201ENST00000516316 100 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 204 ms