Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 AC006461.1-201ENST00000412637 326 ntBASIC2.8□□□□□ -1.96
SOX9P48436 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX9P48436 HMGN1P7-201ENST00000491722 313 ntBASIC2.8□□□□□ -1.96
SOX9P48436 MIR5094-201ENST00000578766 85 ntBASIC2.8□□□□□ -1.96
SOX9P48436 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
SOX9P48436 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.79□□□□□ -1.96
SOX9P48436 RNU1-35P-201ENST00000362782 153 ntBASIC2.79□□□□□ -1.96
SOX9P48436 RNU6-1019P-201ENST00000364424 107 ntBASIC2.79□□□□□ -1.96
SOX9P48436 Y_RNA.398-201ENST00000383952 99 ntBASIC2.79□□□□□ -1.96
SOX9P48436 MIR512-1-201ENST00000384913 84 ntBASIC2.79□□□□□ -1.96
SOX9P48436 MIR181B1-201ENST00000385240 110 ntBASIC2.79□□□□□ -1.96
SOX9P48436 AL049830.1-201ENST00000468034 425 ntBASIC2.79□□□□□ -1.96
SOX9P48436 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.79□□□□□ -1.96
SOX9P48436 MIR3133-201ENST00000583157 78 ntBASIC2.79□□□□□ -1.96
SOX9P48436 ZNF861P-201ENST00000588126 639 ntBASIC2.79□□□□□ -1.96
SOX9P48436 SNORD14A-201ENST00000606526 91 ntBASIC2.79□□□□□ -1.96
SOX9P48436 uc_338.4-201ENST00000616635 176 ntBASIC2.79□□□□□ -1.96
SOX9P48436 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SOX9P48436 Y_RNA.796-201ENST00000364268 102 ntBASIC2.78□□□□□ -1.96
SOX9P48436 Y_RNA.799-201ENST00000364992 102 ntBASIC2.78□□□□□ -1.96
SOX9P48436 Y_RNA.337-201ENST00000365312 102 ntBASIC2.78□□□□□ -1.96
SOX9P48436 RNU6-643P-201ENST00000384018 107 ntBASIC2.78□□□□□ -1.96
SOX9P48436 Y_RNA.506-201ENST00000384494 102 ntBASIC2.78□□□□□ -1.96
SOX9P48436 Y_RNA.580-201ENST00000391004 95 ntBASIC2.78□□□□□ -1.96
SOX9P48436 AC245047.3-201ENST00000429428 127 ntBASIC2.78□□□□□ -1.96
SOX9P48436 HMGN2P3-201ENST00000433603 273 ntBASIC2.78□□□□□ -1.96
SOX9P48436 HMGN2P5-201ENST00000436882 273 ntBASIC2.78□□□□□ -1.96
SOX9P48436 RN7SL297P-201ENST00000483161 293 ntBASIC2.78□□□□□ -1.96
SOX9P48436 AL021707.8-201ENST00000609428 183 ntBASIC2.78□□□□□ -1.96
SOX9P48436 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.78□□□□□ -1.96
SOX9P48436 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SOX9P48436 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SOX9P48436 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SOX9P48436 Y_RNA.253-201ENST00000364562 112 ntBASIC2.77□□□□□ -1.97
SOX9P48436 Y_RNA.432-201ENST00000384087 111 ntBASIC2.77□□□□□ -1.97
SOX9P48436 RNU2-55P-201ENST00000411146 174 ntBASIC2.77□□□□□ -1.97
SOX9P48436 SNRPGP10-201ENST00000432323 225 ntBASIC2.77□□□□□ -1.97
SOX9P48436 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.77□□□□□ -1.97
SOX9P48436 AC003982.1-202ENST00000469928 248 ntBASIC2.77□□□□□ -1.97
SOX9P48436 AC096725.1-201ENST00000514266 313 ntBASIC2.77□□□□□ -1.97
SOX9P48436 RNU7-200P-201ENST00000516105 62 ntBASIC2.77□□□□□ -1.97
SOX9P48436 RNU6-1299P-201ENST00000516316 100 ntBASIC2.77□□□□□ -1.97
SOX9P48436 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
SOX9P48436 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
SOX9P48436 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SOX9P48436 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
SOX9P48436 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SOX9P48436 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SOX9P48436 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SOX9P48436 SNORA1B-201ENST00000362535 133 ntBASIC2.76□□□□□ -1.97
SOX9P48436 SNORD45.3-201ENST00000363836 72 ntBASIC2.76□□□□□ -1.97
SOX9P48436 RNU1-52P-201ENST00000384190 164 ntBASIC2.76□□□□□ -1.97
SOX9P48436 Y_RNA.521-201ENST00000384560 114 ntBASIC2.76□□□□□ -1.97
SOX9P48436 MLLT10P1-201ENST00000418346 262 ntBASIC2.76□□□□□ -1.97
SOX9P48436 OR9P1P-201ENST00000496431 281 ntBASIC2.76□□□□□ -1.97
SOX9P48436 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.76□□□□□ -1.97
SOX9P48436 RNU1-41P-201ENST00000516161 162 ntBASIC2.76□□□□□ -1.97
SOX9P48436 RN7SKP43-201ENST00000516173 320 ntBASIC2.76□□□□□ -1.97
SOX9P48436 RNU6-561P-201ENST00000516222 102 ntBASIC2.76□□□□□ -1.97
SOX9P48436 RNU1-48P-201ENST00000516400 162 ntBASIC2.76□□□□□ -1.97
SOX9P48436 RNU6-126P-201ENST00000516685 103 ntBASIC2.76□□□□□ -1.97
SOX9P48436 MTND5P41-201ENST00000517498 206 ntBASIC2.76□□□□□ -1.97
SOX9P48436 AL590808.1-201ENST00000618696 141 ntBASIC2.76□□□□□ -1.97
SOX9P48436 AC022513.1-201ENST00000624512 117 ntBASIC2.76□□□□□ -1.97
SOX9P48436 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.76□□□□□ -1.97
SOX9P48436 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.75□□□□□ -1.97
SOX9P48436 MIR126-201ENST00000362291 85 ntBASIC2.75□□□□□ -1.97
SOX9P48436 Y_RNA.242-201ENST00000364473 110 ntBASIC2.75□□□□□ -1.97
SOX9P48436 Y_RNA.265-201ENST00000364677 108 ntBASIC2.75□□□□□ -1.97
SOX9P48436 RNY1P5-201ENST00000383890 115 ntBASIC2.75□□□□□ -1.97
SOX9P48436 SNORA67.4-201ENST00000384688 142 ntBASIC2.75□□□□□ -1.97
SOX9P48436 MIR802-201ENST00000390235 94 ntBASIC2.75□□□□□ -1.97
SOX9P48436 SNORA26-201ENST00000391286 122 ntBASIC2.75□□□□□ -1.97
SOX9P48436 MIR1283-2-201ENST00000408621 87 ntBASIC2.75□□□□□ -1.97
SOX9P48436 RNU4-43P-201ENST00000410628 137 ntBASIC2.75□□□□□ -1.97
SOX9P48436 SNORD11-201ENST00000459124 84 ntBASIC2.75□□□□□ -1.97
SOX9P48436 AC084364.2-201ENST00000546924 395 ntBASIC2.75□□□□□ -1.97
SOX9P48436 MIR4662B-201ENST00000579498 81 ntBASIC2.75□□□□□ -1.97
SOX9P48436 CTSLP2-204ENST00000629029 392 ntBASIC2.75□□□□□ -1.97
SOX9P48436 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.74□□□□□ -1.97
SOX9P48436 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
SOX9P48436 RNU6-1130P-201ENST00000365434 107 ntBASIC2.74□□□□□ -1.97
SOX9P48436 SNORA70B-201ENST00000384210 135 ntBASIC2.74□□□□□ -1.97
SOX9P48436 RNU6-125P-201ENST00000384505 107 ntBASIC2.74□□□□□ -1.97
SOX9P48436 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
SOX9P48436 RNU6-131P-201ENST00000391144 107 ntBASIC2.74□□□□□ -1.97
SOX9P48436 RNU2-70P-201ENST00000410718 179 ntBASIC2.74□□□□□ -1.97
SOX9P48436 RNU6-237P-201ENST00000515985 71 ntBASIC2.74□□□□□ -1.97
SOX9P48436 SNORD77.4-201ENST00000516158 81 ntBASIC2.74□□□□□ -1.97
SOX9P48436 MIR4529-201ENST00000578110 78 ntBASIC2.74□□□□□ -1.97
SOX9P48436 SNORD53-201ENST00000579969 78 ntBASIC2.74□□□□□ -1.97
SOX9P48436 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.74□□□□□ -1.97
SOX9P48436 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
SOX9P48436 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SOX9P48436 RNU6-199P-201ENST00000362954 107 ntBASIC2.73□□□□□ -1.97
SOX9P48436 RNU1-51P-201ENST00000365345 176 ntBASIC2.73□□□□□ -1.97
SOX9P48436 RNA5SP109-201ENST00000391010 116 ntBASIC2.73□□□□□ -1.97
SOX9P48436 SNORD37.2-201ENST00000391075 66 ntBASIC2.73□□□□□ -1.97
SOX9P48436 RNU2-7P-201ENST00000410794 178 ntBASIC2.73□□□□□ -1.97
SOX9P48436 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 1695.8 ms