Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 snoU2-30.1-201ENST00000365012 70 ntBASIC3.3□□□□□ -1.88
MSX1P28360 SNORA8-201ENST00000384574 139 ntBASIC3.3□□□□□ -1.88
MSX1P28360 AC107083.1-201ENST00000439643 279 ntBASIC3.3□□□□□ -1.88
MSX1P28360 RNU2-35P-201ENST00000516446 142 ntBASIC3.3□□□□□ -1.88
MSX1P28360 RNU6ATAC12P-201ENST00000516542 115 ntBASIC3.3□□□□□ -1.88
MSX1P28360 RNU7-6P-201ENST00000516845 62 ntBASIC3.3□□□□□ -1.88
MSX1P28360 SNORA18.7-201ENST00000516910 131 ntBASIC3.3□□□□□ -1.88
MSX1P28360 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.3□□□□□ -1.88
MSX1P28360 AP003484.1-201ENST00000530974 250 ntBASIC3.3□□□□□ -1.88
MSX1P28360 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.3□□□□□ -1.88
MSX1P28360 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.3□□□□□ -1.88
MSX1P28360 MIR7851-201ENST00000610611 160 ntBASIC3.3□□□□□ -1.88
MSX1P28360 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX1P28360 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSX1P28360 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSX1P28360 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
MSX1P28360 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
MSX1P28360 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
MSX1P28360 SNORA33-201ENST00000363664 130 ntBASIC3.29□□□□□ -1.88
MSX1P28360 RNA5SP139-201ENST00000364340 117 ntBASIC3.29□□□□□ -1.88
MSX1P28360 Y_RNA.336-201ENST00000365307 109 ntBASIC3.29□□□□□ -1.88
MSX1P28360 Y_RNA.454-201ENST00000384224 113 ntBASIC3.29□□□□□ -1.88
MSX1P28360 RPL21P3-201ENST00000395517 478 ntBASIC3.29□□□□□ -1.88
MSX1P28360 AC087499.4-201ENST00000448505 178 ntBASIC3.29□□□□□ -1.88
MSX1P28360 RNU2-27P-201ENST00000516185 142 ntBASIC3.29□□□□□ -1.88
MSX1P28360 SNORD59.2-201ENST00000516873 68 ntBASIC3.29□□□□□ -1.88
MSX1P28360 AC091932.4-201ENST00000623386 200 ntBASIC3.29□□□□□ -1.88
MSX1P28360 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.29□□□□□ -1.88
MSX1P28360 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
MSX1P28360 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.29□□□□□ -1.88
MSX1P28360 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.29□□□□□ -1.88
MSX1P28360 MFSD8-233ENST00000641482 4860 ntBASIC3.28□□□□□ -1.88
MSX1P28360 MIR515-2-201ENST00000384883 83 ntBASIC3.28□□□□□ -1.88
MSX1P28360 MIR515-1-201ENST00000384884 83 ntBASIC3.28□□□□□ -1.88
MSX1P28360 SNORA48.8-201ENST00000391324 134 ntBASIC3.28□□□□□ -1.88
MSX1P28360 Y_RNA.601-201ENST00000410500 113 ntBASIC3.28□□□□□ -1.88
MSX1P28360 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.28□□□□□ -1.88
MSX1P28360 CYCSP4-201ENST00000429682 331 ntBASIC3.28□□□□□ -1.88
MSX1P28360 RN7SL601P-201ENST00000471221 293 ntBASIC3.28□□□□□ -1.88
MSX1P28360 SNORD45.4-201ENST00000516629 73 ntBASIC3.28□□□□□ -1.88
MSX1P28360 AC024995.1-201ENST00000523014 93 ntBASIC3.28□□□□□ -1.88
MSX1P28360 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
MSX1P28360 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSX1P28360 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSX1P28360 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.28□□□□□ -1.88
MSX1P28360 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.28□□□□□ -1.88
MSX1P28360 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
MSX1P28360 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
MSX1P28360 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
MSX1P28360 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSX1P28360 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSX1P28360 FAM35CP-201ENST00000554755 2470 ntBASIC3.27□□□□□ -1.89
MSX1P28360 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
MSX1P28360 RNU2-63P-201ENST00000410792 194 ntBASIC3.27□□□□□ -1.89
MSX1P28360 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.27□□□□□ -1.89
MSX1P28360 MIR4298-201ENST00000584380 73 ntBASIC3.27□□□□□ -1.89
MSX1P28360 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.27□□□□□ -1.89
MSX1P28360 AC005000.2-201ENST00000605468 310 ntBASIC3.27□□□□□ -1.89
MSX1P28360 CTSLP2-204ENST00000629029 392 ntBASIC3.27□□□□□ -1.89
MSX1P28360 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
MSX1P28360 MAPK10-322ENST00000641485 4530 ntBASIC3.27□□□□□ -1.89
MSX1P28360 AL365361.1-201ENST00000566942 3481 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSX1P28360 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSX1P28360 Y_RNA.10-201ENST00000362371 110 ntBASIC3.26□□□□□ -1.89
MSX1P28360 SNORD9-201ENST00000362566 104 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RNU6-1099P-201ENST00000363533 107 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RNA5SP50-201ENST00000363731 107 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RNA5SP42-201ENST00000364278 115 ntBASIC3.26□□□□□ -1.89
MSX1P28360 MIR592-201ENST00000384959 97 ntBASIC3.26□□□□□ -1.89
MSX1P28360 MIR561-201ENST00000385216 97 ntBASIC3.26□□□□□ -1.89
MSX1P28360 AL627390.1-201ENST00000396055 340 ntBASIC3.26□□□□□ -1.89
MSX1P28360 Y_RNA.593-201ENST00000410292 98 ntBASIC3.26□□□□□ -1.89
MSX1P28360 ATP5J2P3-201ENST00000451550 258 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RPL23AP67-201ENST00000465341 474 ntBASIC3.26□□□□□ -1.89
MSX1P28360 AL163195.1-201ENST00000496941 348 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RN7SL636P-201ENST00000497504 294 ntBASIC3.26□□□□□ -1.89
MSX1P28360 SEM1P1-201ENST00000506694 209 ntBASIC3.26□□□□□ -1.89
MSX1P28360 RNU6-667P-201ENST00000517186 102 ntBASIC3.26□□□□□ -1.89
MSX1P28360 AC002984.1-201ENST00000591692 448 ntBASIC3.26□□□□□ -1.89
MSX1P28360 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.26□□□□□ -1.89
MSX1P28360 AC015726.2-201ENST00000620112 122 ntBASIC3.26□□□□□ -1.89
MSX1P28360 AC025521.1-201ENST00000621624 286 ntBASIC3.26□□□□□ -1.89
MSX1P28360 MIR3651-201ENST00000630427 90 ntBASIC3.26□□□□□ -1.89
MSX1P28360 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSX1P28360 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSX1P28360 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSX1P28360 AC008264.2-201ENST00000610193 3731 ntBASIC3.25□□□□□ -1.89
MSX1P28360 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.25□□□□□ -1.89
MSX1P28360 Y_RNA.17-201ENST00000362433 111 ntBASIC3.25□□□□□ -1.89
MSX1P28360 SNORA68.1-201ENST00000364537 132 ntBASIC3.25□□□□□ -1.89
MSX1P28360 Y_RNA.290-201ENST00000364879 114 ntBASIC3.25□□□□□ -1.89
MSX1P28360 Y_RNA.507-201ENST00000384500 99 ntBASIC3.25□□□□□ -1.89
MSX1P28360 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.25□□□□□ -1.89
MSX1P28360 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.25□□□□□ -1.89
MSX1P28360 AL109933.2-201ENST00000452651 260 ntBASIC3.25□□□□□ -1.89
MSX1P28360 BX510359.1-201ENST00000456973 237 ntBASIC3.25□□□□□ -1.89
MSX1P28360 RNA5SP57-201ENST00000459463 123 ntBASIC3.25□□□□□ -1.89
MSX1P28360 RN7SL594P-201ENST00000470590 287 ntBASIC3.25□□□□□ -1.89
MSX1P28360 AC023141.11-201ENST00000508864 202 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 162.1 ms