Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
NKX2-4Q9H2Z4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
NKX2-4Q9H2Z4 MAPK10-266ENST00000641066 6555 ntBASIC2.83□□□□□ -1.96
NKX2-4Q9H2Z4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-151P-201ENST00000364158 107 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.488-201ENST00000384403 102 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-443P-201ENST00000384780 107 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU11-5P-201ENST00000391216 129 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 RNU1-131P-201ENST00000458943 161 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 AL929325.1-201ENST00000603096 117 ntBASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
NKX2-4Q9H2Z4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.203-201ENST00000364106 102 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RNU1-96P-201ENST00000364163 162 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 SNORD114-6-201ENST00000364393 72 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.337-201ENST00000365312 102 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-643P-201ENST00000384018 107 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RN7SKP101-201ENST00000411376 320 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 UBBP3-201ENST00000445497 241 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 AC245102.2-201ENST00000448956 180 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-561P-201ENST00000516222 102 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RNU7-99P-201ENST00000516271 62 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 SNORD116-25-201ENST00000516517 92 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RNU7-121P-201ENST00000516604 62 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 AC011604.1-201ENST00000545978 196 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 MIR2681-201ENST00000581814 105 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 AC073413.2-201ENST00000604332 360 ntBASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
NKX2-4Q9H2Z4 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 MIR148B-201ENST00000362252 99 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.215-201ENST00000364204 112 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 MIR520G-201ENST00000385064 90 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.587-201ENST00000391210 103 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 SNORA26.7-201ENST00000391288 122 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 MIR1262-201ENST00000408276 93 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 ATP5J2P3-201ENST00000451550 258 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AC023449.1-201ENST00000454464 154 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AC003982.1-202ENST00000469928 248 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 RNA5SP282-201ENST00000516355 108 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 RNU6-1096P-201ENST00000517089 102 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AC245166.1-201ENST00000521012 253 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 DNAJC19P2-201ENST00000593340 302 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AL353149.1-201ENST00000610667 244 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AL359075.3-201ENST00000613288 217 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 MIR338-201ENST00000636369 67 ntBASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NKX2-4Q9H2Z4 AC245060.5-201ENST00000610778 3293 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 MIR26A1-201ENST00000362205 77 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 MIR27B-201ENST00000385129 97 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 SNORA79-201ENST00000408376 140 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 MIR1278-201ENST00000408753 81 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.622-201ENST00000411091 108 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 RN7SL636P-201ENST00000497504 294 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 AC007536.1-201ENST00000533382 349 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 AC026271.5-201ENST00000577873 130 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 U4.3-201ENST00000621047 82 ntBASIC2.79□□□□□ -1.96
NKX2-4Q9H2Z4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 RNA5SP467-201ENST00000391274 118 ntBASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 Y_RNA.621-201ENST00000411065 96 ntBASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 RNU1-142P-201ENST00000516682 145 ntBASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 RN7SKP282-201ENST00000516824 299 ntBASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 RPL23AP91-201ENST00000569211 455 ntBASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
NKX2-4Q9H2Z4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD45.3-201ENST00000363836 72 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 RNU4-11P-201ENST00000365287 132 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 Y_RNA.497-201ENST00000384447 98 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 RNA5SP323-201ENST00000391094 133 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 AL606753.1-201ENST00000427435 87 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 AL049861.1-201ENST00000603130 150 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 AL021707.8-201ENST00000609428 183 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 AC012640.5-201ENST00000623897 319 ntBASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
NKX2-4Q9H2Z4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 AC100821.1-201ENST00000523153 2479 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 RNU6-199P-201ENST00000362954 107 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 SNORD56.5-201ENST00000364281 72 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 SNORA46-201ENST00000384762 135 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 RNU4-43P-201ENST00000410628 137 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 AC007064.1-201ENST00000412238 351 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 AC018634.1-201ENST00000437554 401 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 RNU7-26P-201ENST00000458980 63 ntBASIC2.76□□□□□ -1.97
NKX2-4Q9H2Z4 RNA5SP458-201ENST00000516188 119 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 290.3 ms