Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC007229.1-201ENST00000590455 412 ntBASIC3.81□□□□□ -1.8
SH3RF1Q7Z6J0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SH3RF1Q7Z6J0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SH3RF1Q7Z6J0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
SH3RF1Q7Z6J0 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 RNU6-1276P-201ENST00000365372 104 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC006539.3-201ENST00000454258 129 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 MIR5197-201ENST00000583721 112 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 U2.20-201ENST00000613956 192 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC017071.1-201ENST00000564407 2204 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AC018630.2-201ENST00000534866 2403 ntBASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SH3RF1Q7Z6J0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 Z83843.1-201ENST00000604070 3685 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU6-743P-201ENST00000364151 106 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU6-690P-201ENST00000365242 106 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 AC139453.2-201ENST00000487255 133 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RPS26P48-201ENST00000491713 339 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 SCARNA17.1-201ENST00000516211 143 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU7-99P-201ENST00000516271 62 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 SCARNA17.2-201ENST00000516334 143 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU6-1291P-201ENST00000516591 104 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU7-70P-201ENST00000516941 66 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 RNU6-856P-201ENST00000516959 98 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 AC104027.1-201ENST00000521887 300 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 SCARNA17.4-201ENST00000614296 143 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 U6.98-201ENST00000637157 84 ntBASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SH3RF1Q7Z6J0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 MIR422A-201ENST00000362286 90 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RNU1-96P-201ENST00000364163 162 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RNY1P1-201ENST00000364372 112 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 Y_RNA.290-201ENST00000364879 114 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 Y_RNA.344-201ENST00000365381 112 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 SNORA44-201ENST00000384584 132 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 MT-TI-201ENST00000387365 69 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AC123900.1-201ENST00000420390 96 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AC009969.1-201ENST00000438726 172 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AL161788.1-201ENST00000441805 169 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RPS12P18-201ENST00000442381 270 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RPL23AP67-201ENST00000465341 474 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RN7SL442P-201ENST00000473804 320 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 CKS1BP2-201ENST00000497342 240 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 RNY4P20-201ENST00000516678 93 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 SNORD59.2-201ENST00000516873 68 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 SCARNA20.6-201ENST00000517251 106 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 AC006023.1-201ENST00000603944 259 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 UCA1.1-201ENST00000620952 75 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 ZNF271P-202ENST00000465539 1970 ntBASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SH3RF1Q7Z6J0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 RNU1-72P-201ENST00000362976 153 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 SNORA5B-201ENST00000363786 132 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 Y_RNA.267-201ENST00000364679 109 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 MIR548A2-201ENST00000384956 97 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 AC009414.1-201ENST00000427200 443 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 AC244505.4-201ENST00000434905 287 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 SSXP5-201ENST00000443473 287 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 SCARNA11.3-201ENST00000517276 130 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 AL137790.1-201ENST00000634283 177 ntBASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.77□□□□□ -1.81
SH3RF1Q7Z6J0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 MIR126-201ENST00000362291 85 ntBASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 SNORA63D-201ENST00000364359 132 ntBASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 Y_RNA.410-201ENST00000383992 113 ntBASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 RNU6-242P-201ENST00000384359 107 ntBASIC3.76□□□□□ -1.81
SH3RF1Q7Z6J0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms