Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU11-5P-201ENST00000391216 129 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 SNORA3.2-201ENST00000408221 125 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 RNU6-1146P-201ENST00000516282 102 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 RNU6-479P-201ENST00000516348 105 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 RNU6-856P-201ENST00000516959 98 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 NDUFA5P6-201ENST00000542110 379 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 PRELID2P1-201ENST00000552837 301 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 MIR2681-201ENST00000581814 105 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 AC010332.2-201ENST00000613083 1904 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNU1-22P-201ENST00000363334 158 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNU1-23P-201ENST00000363361 144 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNU4-41P-201ENST00000364426 143 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 SNORA40-201ENST00000388090 126 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 MIR1253-201ENST00000408273 105 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 SNORA79-201ENST00000408376 140 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 MIR1278-201ENST00000408753 81 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNU2-55P-201ENST00000411146 174 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RPS29P21-201ENST00000496272 170 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 AC097462.1-201ENST00000514125 324 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNU6-63P-201ENST00000516690 95 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 MIR4438-201ENST00000585271 93 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 AC012640.5-201ENST00000623897 319 ntBASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC87Q9NVE4 MIR148B-201ENST00000362252 99 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RNU6-743P-201ENST00000364151 106 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RNU6-22P-201ENST00000384355 107 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RNU2-51P-201ENST00000410708 197 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RPL23AP58-201ENST00000440453 469 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RPS27P1-201ENST00000450552 247 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 RNU7-172P-201ENST00000517125 64 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 ZNF861P-201ENST00000588126 639 ntBASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC87Q9NVE4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 AC092435.3-201ENST00000565538 3654 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 SNORD37.2-201ENST00000391075 66 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 RNU6-257P-201ENST00000410238 98 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 RNU2-48P-201ENST00000410694 191 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 MTATP6P29-201ENST00000415057 132 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 UQCRHP3-201ENST00000451503 251 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 AC112693.2-201ENST00000556538 232 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 AL449363.1-201ENST00000617815 186 ntBASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC87Q9NVE4 RNU6-818P-201ENST00000364837 108 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 Y_RNA.521-201ENST00000384560 114 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 RN7SKP192-201ENST00000411291 327 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 AC023449.1-201ENST00000454464 154 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 AC003982.1-202ENST00000469928 248 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 AC006483.1-201ENST00000487308 313 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 RNU6-991P-201ENST00000516168 107 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 RN7SKP43-201ENST00000516173 320 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 RNU6-561P-201ENST00000516222 102 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 AL021707.8-201ENST00000609428 183 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 U2.20-201ENST00000613956 192 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 U6.73-201ENST00000619194 103 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 MIR6844-201ENST00000637122 62 ntBASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC87Q9NVE4 Y_RNA.393-201ENST00000383936 102 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 MIR592-201ENST00000384959 97 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 RNU6-313P-201ENST00000516317 112 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 AL160236.1-201ENST00000556317 195 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 CTSLP2-204ENST00000629029 392 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 MIR3658-201ENST00000636291 56 ntBASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.44□□□□□ -1.86
CCDC87Q9NVE4 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 RNU6-220P-201ENST00000390919 107 ntBASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 SNRPGP8-201ENST00000454064 226 ntBASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 SNORA25.12-201ENST00000516202 82 ntBASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC87Q9NVE4 AP006437.1-201ENST00000641440 3685 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 MIR26A1-201ENST00000362205 77 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 SNORD45.3-201ENST00000363836 72 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 Y_RNA.203-201ENST00000364106 102 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 MIR539-201ENST00000365690 78 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 Y_RNA.587-201ENST00000391210 103 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 SRIP3-201ENST00000413200 219 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 AC104332.2-201ENST00000429959 156 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 AC138915.1-201ENST00000565427 1685 ntBASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC87Q9NVE4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 RNU6-461P-201ENST00000364195 107 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 MIR520G-201ENST00000385064 90 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms