Protein–RNA interactions for Protein: Q9C0J9

BHLHE41, Class E basic helix-loop-helix protein 41, humanhuman

Predicted RBP Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BHLHE41Q9C0J9 RNU1-142P-201ENST00000516682 145 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 IGKV2-26-201ENST00000518305 343 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 MTND5P32-201ENST00000560711 1802 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 AC245060.5-201ENST00000610778 3293 ntBASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
BHLHE41Q9C0J9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.15□□□□□ -1.9
BHLHE41Q9C0J9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
BHLHE41Q9C0J9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 RNU4-35P-201ENST00000362588 141 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 SNORA1-201ENST00000384107 130 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 MIR183-201ENST00000384958 110 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 MIR218-2-201ENST00000385006 110 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 MIR802-201ENST00000390235 94 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-220P-201ENST00000390919 107 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 CST9LP2-201ENST00000437612 320 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 AL353689.1-201ENST00000438895 199 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 RN7SKP19-201ENST00000516016 252 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-341P-201ENST00000516973 96 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 RNU7-128P-201ENST00000517247 62 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 uc_338.1-201ENST00000612113 180 ntBASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
BHLHE41Q9C0J9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 MIR126-201ENST00000362291 85 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 SNORD72-201ENST00000390994 80 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 RNA5SP293-201ENST00000410527 113 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 RN7SL293P-201ENST00000481765 281 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 AC008507.4-201ENST00000585464 127 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 AC025166.1-201ENST00000612411 163 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 MIR338-201ENST00000636369 67 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 U6.105-201ENST00000637379 88 ntBASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
BHLHE41Q9C0J9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 Y_RNA.35-201ENST00000362601 101 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 SNORD56.3-201ENST00000363507 71 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 SNORD61-201ENST00000384252 73 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AL031121.1-201ENST00000406553 254 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 SRIP3-201ENST00000413200 219 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AC063976.4-201ENST00000421971 163 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AC006028.1-201ENST00000438379 402 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AL021397.1-201ENST00000451806 248 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 Y_RNA.649-201ENST00000459077 103 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AC087685.1-201ENST00000587507 141 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 AC004832.5-201ENST00000608677 401 ntBASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
BHLHE41Q9C0J9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 RNU1-70P-201ENST00000362618 164 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-1292P-201ENST00000383856 107 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 SNORD24-201ENST00000383884 75 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 SNORA8-201ENST00000384574 139 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 AC115115.1-201ENST00000449927 248 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 ATP5J2P3-201ENST00000451550 258 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-693P-201ENST00000516134 107 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 SCARNA13-201ENST00000516672 275 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 AL358944.1-201ENST00000528537 144 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 MIR4679-2-201ENST00000578358 77 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 MIR3613-201ENST00000579844 87 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 MIR5195-201ENST00000583555 115 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 AL353149.1-201ENST00000610667 244 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 ZNF271P-202ENST00000465539 1970 ntBASIC3.12□□□□□ -1.91
BHLHE41Q9C0J9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-888P-201ENST00000363010 101 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 Y_RNA.99-201ENST00000363138 105 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 SNORA25B-201ENST00000365507 128 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 RNU6-880P-201ENST00000384526 107 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 MIR548A1-201ENST00000385041 97 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 RNA5SP229-201ENST00000410809 99 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 SNRPGP13-201ENST00000442212 177 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 Y_RNA.651-201ENST00000459380 103 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 AC018868.1-201ENST00000491307 315 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 SCGB1D5P-201ENST00000515134 247 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 RNA5SP217-201ENST00000515959 91 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 Y_RNA.666-201ENST00000516187 112 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 MIR3200-201ENST00000580767 85 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 AL591926.4-201ENST00000616895 298 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 MIR7975-201ENST00000619350 68 ntBASIC3.11□□□□□ -1.91
BHLHE41Q9C0J9 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.1□□□□□ -1.91
BHLHE41Q9C0J9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
BHLHE41Q9C0J9 Z83843.1-201ENST00000604070 3685 ntBASIC3.1□□□□□ -1.91
BHLHE41Q9C0J9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms