Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC2.55□□□□□ -2
COL4A3Q01955 RNU6-588P-201ENST00000410281 105 ntBASIC2.55□□□□□ -2
COL4A3Q01955 AL356320.1-201ENST00000429616 163 ntBASIC2.55□□□□□ -2
COL4A3Q01955 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.55□□□□□ -2
COL4A3Q01955 SNRPGP8-201ENST00000454064 226 ntBASIC2.55□□□□□ -2
COL4A3Q01955 HMGN2P9-201ENST00000476875 229 ntBASIC2.55□□□□□ -2
COL4A3Q01955 RNU6-1333P-201ENST00000516162 93 ntBASIC2.55□□□□□ -2
COL4A3Q01955 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.55□□□□□ -2
COL4A3Q01955 MIR4753-201ENST00000585119 83 ntBASIC2.55□□□□□ -2
COL4A3Q01955 AC005972.2-201ENST00000604690 348 ntBASIC2.55□□□□□ -2
COL4A3Q01955 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.55□□□□□ -2
COL4A3Q01955 Y_RNA.420-201ENST00000384043 110 ntBASIC2.54□□□□□ -2
COL4A3Q01955 Y_RNA.521-201ENST00000384560 114 ntBASIC2.54□□□□□ -2
COL4A3Q01955 MIR499A-201ENST00000384903 122 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AP000567.1-201ENST00000406413 156 ntBASIC2.54□□□□□ -2
COL4A3Q01955 RNU6-1077P-201ENST00000410506 102 ntBASIC2.54□□□□□ -2
COL4A3Q01955 RPL23AP7-203ENST00000449021 469 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AC114982.1-201ENST00000469402 321 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.54□□□□□ -2
COL4A3Q01955 AC010598.1-201ENST00000510378 103 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.54□□□□□ -2
COL4A3Q01955 SCARNA17.1-201ENST00000516211 143 ntBASIC2.54□□□□□ -2
COL4A3Q01955 SCARNA17.2-201ENST00000516334 143 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AP003357.1-201ENST00000604497 148 ntBASIC2.54□□□□□ -2
COL4A3Q01955 SCARNA17.4-201ENST00000614296 143 ntBASIC2.54□□□□□ -2
COL4A3Q01955 MIR548AY-201ENST00000617669 107 ntBASIC2.54□□□□□ -2
COL4A3Q01955 AC090517.3-201ENST00000625170 141 ntBASIC2.54□□□□□ -2
COL4A3Q01955 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.54□□□□□ -2
COL4A3Q01955 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
COL4A3Q01955 MIR367-201ENST00000362299 68 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNA5SP295-201ENST00000362655 121 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU6-1180P-201ENST00000364935 107 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU6-1323P-201ENST00000384025 107 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU6-768P-201ENST00000384683 107 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNA5SP210-201ENST00000391034 120 ntBASIC2.53□□□□□ -2
COL4A3Q01955 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.53□□□□□ -2
COL4A3Q01955 AC092991.1-201ENST00000477176 376 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU4-57P-201ENST00000515980 135 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU2-56P-201ENST00000516826 190 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU7-116P-201ENST00000516940 62 ntBASIC2.53□□□□□ -2
COL4A3Q01955 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.53□□□□□ -2
COL4A3Q01955 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A3Q01955 AC009487.2-201ENST00000420969 6821 ntBASIC2.53□□□□□ -2
COL4A3Q01955 SNORA27.1-201ENST00000362604 124 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU6-271P-201ENST00000363858 105 ntBASIC2.53□□□□□ -2
COL4A3Q01955 MIR873-201ENST00000401120 77 ntBASIC2.53□□□□□ -2
COL4A3Q01955 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.53□□□□□ -2
COL4A3Q01955 RPS27P26-201ENST00000494583 239 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNA5SP112-201ENST00000515937 99 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNA5SP20-201ENST00000515976 84 ntBASIC2.53□□□□□ -2
COL4A3Q01955 RNU6-948P-201ENST00000516374 107 ntBASIC2.53□□□□□ -2
COL4A3Q01955 Y_RNA.686-201ENST00000516548 134 ntBASIC2.53□□□□□ -2
COL4A3Q01955 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.53□□□□□ -2
COL4A3Q01955 snoZ196.1-201ENST00000625269 89 ntBASIC2.53□□□□□ -2
COL4A3Q01955 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL4A3Q01955 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A3Q01955 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.52□□□□□ -2.01
COL4A3Q01955 Y_RNA.124-201ENST00000363339 93 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 RNU6-1325P-201ENST00000364905 105 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 RNU6-975P-201ENST00000384296 105 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 SNORA79-201ENST00000408376 140 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 MIR1278-201ENST00000408753 81 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.52□□□□□ -2.01
COL4A3Q01955 RNU7-197P-201ENST00000458836 62 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 RNU6-221P-201ENST00000459541 99 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 SNRPGP3-201ENST00000469405 227 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 RPL23AP54-201ENST00000495129 419 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 AL031274.2-201ENST00000599419 203 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 AP001340.1-201ENST00000624405 217 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.52□□□□□ -2.01
COL4A3Q01955 AL159152.1-201ENST00000635019 2587 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
COL4A3Q01955 AL021368.2-201ENST00000606125 5352 ntBASIC2.52□□□□□ -2.01
COL4A3Q01955 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A3Q01955 RNU6-215P-201ENST00000365169 102 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 RNU6-234P-201ENST00000365229 104 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 SNORD116-14-201ENST00000383894 92 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 SNORD116-17-201ENST00000383929 92 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 RNU6-44P-201ENST00000384045 107 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 SNORD116-13-201ENST00000384408 92 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 SNORD116-15-201ENST00000384445 92 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 SNORD116-19-201ENST00000384729 92 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 Y_RNA.587-201ENST00000391210 103 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 AC011603.4-201ENST00000611325 277 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 MIR6779-201ENST00000617283 64 ntBASIC2.51□□□□□ -2.01
COL4A3Q01955 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.51□□□□□ -2.01
COL4A3Q01955 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A3Q01955 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL4A3Q01955 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.51□□□□□ -2.01
COL4A3Q01955 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL4A3Q01955 AL512604.1-201ENST00000404812 257 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RNU4-43P-201ENST00000410628 137 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RN7SKP123-201ENST00000410732 291 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 AC016717.1-201ENST00000448918 286 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RPS27P1-201ENST00000450552 247 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 RNU6-919P-201ENST00000516731 104 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 AC027419.1-201ENST00000522976 328 ntBASIC2.5□□□□□ -2.01
COL4A3Q01955 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
COL4A3Q01955 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms