Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD9P28356 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD9P28356 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD9P28356 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
HOXD9P28356 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD9P28356 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD9P28356 Y_RNA.7-201ENST00000362352 102 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 Y_RNA.121-201ENST00000363309 113 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-899P-201ENST00000363947 107 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 SNORA67.1-201ENST00000364749 141 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 Y_RNA.441-201ENST00000384123 112 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 SNORA20B-201ENST00000384220 132 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-1235P-201ENST00000384559 107 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 SNORA64-201ENST00000384674 134 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 Y_RNA.571-201ENST00000384753 98 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 MIR873-201ENST00000401120 77 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-855P-201ENST00000410395 104 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 HMGN2P18-201ENST00000450680 270 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 SNORD65B-201ENST00000459126 73 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-498P-201ENST00000459468 107 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-1219P-201ENST00000516143 112 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNA5SP200-201ENST00000516360 103 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 RNU6-406P-201ENST00000516470 107 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD9P28356 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD9P28356 MIR5688-201ENST00000580619 83 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD9P28356 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD9P28356 AC068700.1-201ENST00000565862 3754 ntBASIC2.25□□□□□ -2.05
HOXD9P28356 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXD9P28356 Z82195.2-201ENST00000612348 18351 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 SNORA27.1-201ENST00000362604 124 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RNU6-271P-201ENST00000363858 105 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RNU4-17P-201ENST00000365598 141 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RNU1-148P-201ENST00000384472 162 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RNU2-32P-201ENST00000411193 191 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RPL36AP21-201ENST00000490372 323 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 RNU2-34P-201ENST00000516534 121 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 SCARNA16.3-201ENST00000516595 184 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXD9P28356 AC006435.5-201ENST00000624486 112 ntBASIC2.24□□□□□ -2.05
HOXD9P28356 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
HOXD9P28356 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD9P28356 RNU1-23P-201ENST00000363361 144 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 Y_RNA.238-201ENST00000364441 102 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-312P-201ENST00000364629 107 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-438P-201ENST00000365561 103 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNY1P5-201ENST00000383890 115 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-125P-201ENST00000384505 107 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 MIR626-201ENST00000385032 94 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 MIR524-201ENST00000385242 87 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 SNORA11.4-201ENST00000408823 129 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU2-48P-201ENST00000410694 191 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-1135P-201ENST00000411083 103 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 AC016717.1-201ENST00000448918 286 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-965P-201ENST00000516721 96 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 Y_RNA.703-201ENST00000516846 111 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 RNU6-789P-201ENST00000517105 102 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 AC025647.1-201ENST00000517879 253 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXD9P28356 MIR3126-201ENST00000577443 74 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 AC108706.1-201ENST00000611053 297 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 MIR6132-201ENST00000622083 109 ntBASIC2.23□□□□□ -2.05
HOXD9P28356 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXD9P28356 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
HOXD9P28356 Y_RNA.75-201ENST00000362927 97 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 Y_RNA.124-201ENST00000363339 93 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 SNORA3A-201ENST00000364113 130 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 SNORA25B-201ENST00000365507 128 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RNU6-144P-201ENST00000383951 107 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 SNORD14D-201ENST00000384390 87 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 Y_RNA.506-201ENST00000384494 102 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RNU6-381P-201ENST00000391259 108 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 AL023284.1-201ENST00000403956 276 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RNU6-57P-201ENST00000411348 103 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXD9P28356 MTCO1P44-201ENST00000441935 243 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RPS20P10-201ENST00000451209 253 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RNU7-141P-201ENST00000459304 62 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 snoU13.15-201ENST00000459407 104 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 AC093259.1-201ENST00000509755 300 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 RNA5SP402-201ENST00000517148 110 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 MIR3144-201ENST00000579460 79 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 AC021753.1-201ENST00000635724 168 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 AC134026.1-201ENST00000623249 2239 ntBASIC2.22□□□□□ -2.05
HOXD9P28356 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXD9P28356 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
HOXD9P28356 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
HOXD9P28356 Y_RNA.23-201ENST00000362496 106 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU6-774P-201ENST00000363238 107 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 Y_RNA.170-201ENST00000363746 110 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 Y_RNA.172-201ENST00000363765 102 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU6-1048P-201ENST00000364054 107 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 Y_RNA.332-201ENST00000365271 113 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 RNU6-418P-201ENST00000384035 107 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 SNORA67.3-201ENST00000384366 140 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 SNORA8.3-201ENST00000384679 139 ntBASIC2.21□□□□□ -2.06
HOXD9P28356 MIR526A2-201ENST00000390198 65 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms