Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR488-201ENST00000365739 83 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 EDDM3CP-201ENST00000415977 425 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 GOT2P5-201ENST00000433995 546 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 AL161788.1-201ENST00000441805 169 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 AL357552.1-201ENST00000445254 415 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 CYP2C59P-201ENST00000457790 269 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 RN7SL542P-201ENST00000467147 294 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 COX6CP6-201ENST00000490840 228 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-240P-201ENST00000516098 97 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 RN7SKP43-201ENST00000516173 320 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 Y_RNA.666-201ENST00000516187 112 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 SNORA40.13-201ENST00000516379 120 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 AC073413.2-201ENST00000604332 360 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 AC022217.4-201ENST00000604389 163 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 SNORA50A-202ENST00000629536 136 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.18□□□□□ -1.9
HIF3AQ9Y2N7 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 SNORD9-201ENST00000362566 104 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 MIR184-201ENST00000384962 84 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 MIR95-201ENST00000385072 81 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-440P-201ENST00000390882 105 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 FO393413.1-201ENST00000402892 195 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 MIR1253-201ENST00000408273 105 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 CYCSP19-201ENST00000411715 316 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 AC025750.2-201ENST00000442609 450 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 AC093259.1-201ENST00000509755 300 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 PHBP14-201ENST00000512887 367 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 SNORA4.4-201ENST00000515921 135 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-109P-201ENST00000516364 107 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 RNA5SP281-201ENST00000516504 135 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-184P-201ENST00000516514 107 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-1231P-201ENST00000517185 103 ntBASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HIF3AQ9Y2N7 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 SNORA68.1-201ENST00000364537 132 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 AL117342.1-201ENST00000404861 406 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 RNU6ATAC-201ENST00000408749 126 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-1186P-201ENST00000410429 97 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 AC123900.1-201ENST00000420390 96 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 SNRPGP10-201ENST00000432323 225 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 SNORD105B-201ENST00000458770 79 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 AP001486.1-201ENST00000463339 476 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 CKS1BP2-201ENST00000497342 240 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-693P-201ENST00000516134 107 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 RNU6-1291P-201ENST00000516591 104 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 SNORA70.19-201ENST00000516717 90 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 AL589743.1-201ENST00000551932 2712 ntBASIC3.16□□□□□ -1.9
HIF3AQ9Y2N7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
HIF3AQ9Y2N7 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.332-201ENST00000365271 113 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-1292P-201ENST00000383856 107 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 RNY1P7-201ENST00000384743 110 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 MIR200C-201ENST00000384980 68 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 SNORD77.3-201ENST00000391113 65 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 PTMAP2-201ENST00000397627 327 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 SNORA19.1-201ENST00000410656 129 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 HMGN2P34-201ENST00000437647 269 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 AC021205.2-201ENST00000480069 347 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-970P-201ENST00000516312 107 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 AC068657.1-201ENST00000520807 306 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 MIR3158-1-201ENST00000583596 81 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 MIR376A2-201ENST00000636782 80 ntBASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HIF3AQ9Y2N7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.49-201ENST00000362714 112 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-888P-201ENST00000363010 101 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.253-201ENST00000364562 112 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 MIR548A2-201ENST00000384956 97 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 MIR590-201ENST00000385008 97 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 MIR181B1-201ENST00000385240 110 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 CYCSP35-201ENST00000451978 304 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 HMGN1P7-201ENST00000491722 313 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-113P-201ENST00000516653 101 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 SNORA67.7-201ENST00000516664 135 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 SNORA70.18-201ENST00000516696 98 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 SCARNA15-202ENST00000516881 127 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-856P-201ENST00000516959 98 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 SNORA48.11-201ENST00000517015 89 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 AC062037.1-201ENST00000605302 128 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms