Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 SNORA1.2-201ENST00000365189 134 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 RNA5SP372-201ENST00000390836 115 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 SPINT5P-201ENST00000448174 155 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.89□□□□□ -1.47
NCBP3Q53F19 AC007536.1-201ENST00000533382 349 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 MIR4697-201ENST00000582977 78 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 AC079587.1-201ENST00000603846 277 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 AL355297.2-201ENST00000604792 129 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 AC027279.3-201ENST00000625055 122 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
NCBP3Q53F19 MFSD8-242ENST00000641690 4199 ntBASIC5.89□□□□□ -1.47
NCBP3Q53F19 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
NCBP3Q53F19 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NCBP3Q53F19 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
NCBP3Q53F19 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
NCBP3Q53F19 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NCBP3Q53F19 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
NCBP3Q53F19 MIRLET7C-201ENST00000362160 84 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 RNU6-1094P-201ENST00000362416 104 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 RNA5SP22-201ENST00000365393 109 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 Y_RNA.370-201ENST00000365589 108 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 RPS16P5-201ENST00000406501 404 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 RNU6ATAC41P-201ENST00000408600 126 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 ARF4P2-201ENST00000430209 526 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.88□□□□□ -1.47
NCBP3Q53F19 RNU6-523P-201ENST00000516304 54 ntBASIC5.88□□□□□ -1.47
NCBP3Q53F19 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC5.88□□□□□ -1.47
NCBP3Q53F19 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.88□□□□□ -1.47
NCBP3Q53F19 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NCBP3Q53F19 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
NCBP3Q53F19 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NCBP3Q53F19 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.87□□□□□ -1.47
NCBP3Q53F19 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.87□□□□□ -1.47
NCBP3Q53F19 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NCBP3Q53F19 RNA5SP28-201ENST00000363841 119 ntBASIC5.87□□□□□ -1.47
NCBP3Q53F19 RNU1-63P-201ENST00000383902 164 ntBASIC5.87□□□□□ -1.47
NCBP3Q53F19 RNU7-153P-201ENST00000516455 62 ntBASIC5.87□□□□□ -1.47
NCBP3Q53F19 AC008745.1-201ENST00000604064 271 ntBASIC5.87□□□□□ -1.47
NCBP3Q53F19 Y_RNA.788-201ENST00000622394 112 ntBASIC5.87□□□□□ -1.47
NCBP3Q53F19 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
NCBP3Q53F19 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NCBP3Q53F19 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
NCBP3Q53F19 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.86□□□□□ -1.47
NCBP3Q53F19 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
NCBP3Q53F19 Y_RNA.57-201ENST00000362806 113 ntBASIC5.86□□□□□ -1.47
NCBP3Q53F19 RN7SKP167-201ENST00000411047 285 ntBASIC5.86□□□□□ -1.47
NCBP3Q53F19 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC5.86□□□□□ -1.47
NCBP3Q53F19 SNORD3E-202ENST00000627253 216 ntBASIC5.86□□□□□ -1.47
NCBP3Q53F19 AP000648.3-201ENST00000623539 4507 ntBASIC5.86□□□□□ -1.47
NCBP3Q53F19 MAPK10-322ENST00000641485 4530 ntBASIC5.86□□□□□ -1.47
NCBP3Q53F19 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
NCBP3Q53F19 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC5.85□□□□□ -1.47
NCBP3Q53F19 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC5.85□□□□□ -1.47
NCBP3Q53F19 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
NCBP3Q53F19 RPS29P12-201ENST00000460178 152 ntBASIC5.85□□□□□ -1.47
NCBP3Q53F19 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
NCBP3Q53F19 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
NCBP3Q53F19 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NCBP3Q53F19 RNU6-478P-201ENST00000363904 110 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 RNU6-865P-201ENST00000364772 107 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 RNU1-44P-201ENST00000384453 163 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 MIR561-201ENST00000385216 97 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 SNORA11F-201ENST00000408237 128 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 RPS29P29-201ENST00000456396 171 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 RN7SL330P-201ENST00000469709 307 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 AC244505.7-201ENST00000599675 272 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 AC005000.2-201ENST00000605468 310 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 SNORA28-201ENST00000606769 126 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 MIR8054-201ENST00000620877 86 ntBASIC5.84□□□□□ -1.47
NCBP3Q53F19 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NCBP3Q53F19 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
NCBP3Q53F19 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
NCBP3Q53F19 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.84□□□□□ -1.48
NCBP3Q53F19 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
NCBP3Q53F19 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.83□□□□□ -1.48
NCBP3Q53F19 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.83□□□□□ -1.48
NCBP3Q53F19 MIR5096-201ENST00000583713 70 ntBASIC5.83□□□□□ -1.48
NCBP3Q53F19 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.83□□□□□ -1.48
NCBP3Q53F19 MIR7641-1-201ENST00000627518 61 ntBASIC5.83□□□□□ -1.48
NCBP3Q53F19 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
NCBP3Q53F19 Y_RNA.99-201ENST00000363138 105 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 RNU6-160P-201ENST00000384591 107 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 MIR181B2-201ENST00000385004 89 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 AC069285.2-201ENST00000440210 275 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 AC006539.3-201ENST00000454258 129 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 AC125388.1-201ENST00000459631 156 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 AC015795.1-201ENST00000513669 327 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 SNORA25.13-201ENST00000516395 103 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 AC020891.4-201ENST00000605745 93 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 MIR6758-201ENST00000620653 63 ntBASIC5.82□□□□□ -1.48
NCBP3Q53F19 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
NCBP3Q53F19 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
NCBP3Q53F19 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NCBP3Q53F19 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
NCBP3Q53F19 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.81□□□□□ -1.48
NCBP3Q53F19 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NCBP3Q53F19 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC5.81□□□□□ -1.48
NCBP3Q53F19 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms