Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 Y_RNA.649-201ENST00000459077 103 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 RN7SL20P-201ENST00000488827 297 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 AC097462.1-201ENST00000514125 324 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 SCARNA13-201ENST00000516672 275 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 SNORD59.2-201ENST00000516873 68 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 RNU7-172P-201ENST00000517125 64 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 RNU6-586P-201ENST00000517265 104 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 AC011604.1-201ENST00000545978 196 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 MIR4438-201ENST00000585271 93 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 AC007318.2-201ENST00000620999 243 ntBASIC3.26□□□□□ -1.89
SOX4Q06945 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.26□□□□□ -1.89
SOX4Q06945 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX4Q06945 RNU1-72P-201ENST00000362976 153 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 RNU6-1138P-201ENST00000365359 106 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 Y_RNA.486-201ENST00000384398 107 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 RNU6-880P-201ENST00000384526 107 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 MIR562-201ENST00000384894 95 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 MIRLET7F2-201ENST00000385277 83 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 RNA5SP127-201ENST00000411051 133 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 AL139132.1-201ENST00000431587 344 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.25□□□□□ -1.89
SOX4Q06945 OR9P1P-201ENST00000496431 281 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 MRPS36P2-201ENST00000512569 299 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 SCARNA17.1-201ENST00000516211 143 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 SCARNA17.2-201ENST00000516334 143 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SOX4Q06945 AL022345.2-201ENST00000606307 135 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SOX4Q06945 AC025166.1-201ENST00000612411 163 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 SCARNA17.4-201ENST00000614296 143 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 AL137790.1-201ENST00000634283 177 ntBASIC3.25□□□□□ -1.89
SOX4Q06945 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SOX4Q06945 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
SOX4Q06945 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SOX4Q06945 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX4Q06945 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX4Q06945 MIR624-201ENST00000385217 97 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 SNORA48.8-201ENST00000391324 134 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 MIR891A-201ENST00000401237 79 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 AC025750.2-201ENST00000442609 450 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 HMGN2P18-201ENST00000450680 270 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 RNA5SP217-201ENST00000515959 91 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 RNU2-34P-201ENST00000516534 121 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 Y_RNA.694-201ENST00000516677 117 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 RNU6-126P-201ENST00000516685 103 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 AC018630.3-201ENST00000542637 96 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.24□□□□□ -1.89
SOX4Q06945 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX4Q06945 MIR4662B-201ENST00000579498 81 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX4Q06945 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 AL136360.1-201ENST00000503377 1900 ntBASIC3.24□□□□□ -1.89
SOX4Q06945 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX4Q06945 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX4Q06945 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
SOX4Q06945 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.23□□□□□ -1.89
SOX4Q06945 SNORD56.3-201ENST00000363507 71 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SOX4Q06945 COTL1P1-201ENST00000422309 375 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 AC107083.1-201ENST00000439643 279 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.23□□□□□ -1.89
SOX4Q06945 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX4Q06945 RPS29P21-201ENST00000496272 170 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 RNU6-965P-201ENST00000516721 96 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 RNU6-365P-201ENST00000517113 106 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 RNU1-104P-201ENST00000517280 175 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 AC090115.4-201ENST00000609970 188 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 MIR1248-201ENST00000629190 106 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SOX4Q06945 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
SOX4Q06945 GABRG2-229ENST00000641017 3628 ntBASIC3.23□□□□□ -1.89
SOX4Q06945 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX4Q06945 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SOX4Q06945 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX4Q06945 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SOX4Q06945 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX4Q06945 MTND5P18-201ENST00000445624 1801 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 Y_RNA.66-201ENST00000362862 102 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 Y_RNA.495-201ENST00000384435 112 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 EEF1A1P41-201ENST00000414667 207 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 MTATP6P21-201ENST00000440681 189 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.22□□□□□ -1.89
SOX4Q06945 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.22□□□□□ -1.89
SOX4Q06945 RN7SL442P-201ENST00000473804 320 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 SNORA64.4-201ENST00000516632 81 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 AC007751.1-201ENST00000529260 376 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 AL365205.2-201ENST00000594586 68 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 JPX_2.1-201ENST00000614161 69 ntBASIC3.22□□□□□ -1.89
SOX4Q06945 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX4Q06945 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
SOX4Q06945 AC091564.4-201ENST00000533934 2194 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX4Q06945 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX4Q06945 MIR450A1-201ENST00000362262 91 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX4Q06945 AL031737.1-201ENST00000450125 223 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AL021397.1-201ENST00000451806 248 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AC006539.3-201ENST00000454258 129 ntBASIC3.21□□□□□ -1.9
SOX4Q06945 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX4Q06945 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms