Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNORD115-30-201ENST00000364117 82 ntBASIC2.26□□□□□ -2.05
CIITAP33076 SNORA72.2-201ENST00000365028 127 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNU6-326P-201ENST00000365480 107 ntBASIC2.26□□□□□ -2.05
CIITAP33076 Y_RNA.383-201ENST00000383855 97 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNU6-418P-201ENST00000384035 107 ntBASIC2.26□□□□□ -2.05
CIITAP33076 Y_RNA.477-201ENST00000384352 108 ntBASIC2.26□□□□□ -2.05
CIITAP33076 Y_RNA.539-201ENST00000384635 107 ntBASIC2.26□□□□□ -2.05
CIITAP33076 U3.40-201ENST00000408706 208 ntBASIC2.26□□□□□ -2.05
CIITAP33076 SRIP3-201ENST00000413200 219 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RPL23AP36-201ENST00000413895 458 ntBASIC2.26□□□□□ -2.05
CIITAP33076 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.26□□□□□ -2.05
CIITAP33076 AL021397.1-201ENST00000451806 248 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNU7-57P-201ENST00000459540 60 ntBASIC2.26□□□□□ -2.05
CIITAP33076 AC010531.2-201ENST00000465012 153 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RPL39P38-201ENST00000467018 153 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNU6-991P-201ENST00000516168 107 ntBASIC2.26□□□□□ -2.05
CIITAP33076 Y_RNA.673-201ENST00000516306 88 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNU6-155P-201ENST00000516347 100 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNA5SP490-201ENST00000517141 136 ntBASIC2.26□□□□□ -2.05
CIITAP33076 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.26□□□□□ -2.05
CIITAP33076 U6.115-201ENST00000636045 103 ntBASIC2.26□□□□□ -2.05
CIITAP33076 RNA5SP160-201ENST00000364866 120 ntBASIC2.25□□□□□ -2.05
CIITAP33076 Y_RNA.569-201ENST00000384749 103 ntBASIC2.25□□□□□ -2.05
CIITAP33076 AL603910.2-201ENST00000407268 136 ntBASIC2.25□□□□□ -2.05
CIITAP33076 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.25□□□□□ -2.05
CIITAP33076 MTCO1P5-201ENST00000433573 344 ntBASIC2.25□□□□□ -2.05
CIITAP33076 RNU2-19P-201ENST00000517288 84 ntBASIC2.25□□□□□ -2.05
CIITAP33076 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.25□□□□□ -2.05
CIITAP33076 MIR3145-201ENST00000580727 82 ntBASIC2.25□□□□□ -2.05
CIITAP33076 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.25□□□□□ -2.05
CIITAP33076 AC006001.4-201ENST00000622243 395 ntBASIC2.25□□□□□ -2.05
CIITAP33076 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.25□□□□□ -2.05
CIITAP33076 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.24□□□□□ -2.05
CIITAP33076 Y_RNA.20-201ENST00000362479 113 ntBASIC2.24□□□□□ -2.05
CIITAP33076 SNORD14D-201ENST00000384390 87 ntBASIC2.24□□□□□ -2.05
CIITAP33076 RNU6-1026P-201ENST00000384465 108 ntBASIC2.24□□□□□ -2.05
CIITAP33076 SNORD58.1-201ENST00000391313 66 ntBASIC2.24□□□□□ -2.05
CIITAP33076 HMGN2P39-201ENST00000398005 273 ntBASIC2.24□□□□□ -2.05
CIITAP33076 AC016909.1-201ENST00000415916 166 ntBASIC2.24□□□□□ -2.05
CIITAP33076 RPL23AP7-203ENST00000449021 469 ntBASIC2.24□□□□□ -2.05
CIITAP33076 snoU13.23-201ENST00000458863 104 ntBASIC2.24□□□□□ -2.05
CIITAP33076 RNU6-221P-201ENST00000459541 99 ntBASIC2.24□□□□□ -2.05
CIITAP33076 RNU6-1023P-201ENST00000516137 106 ntBASIC2.24□□□□□ -2.05
CIITAP33076 RNU2-31P-201ENST00000516954 155 ntBASIC2.24□□□□□ -2.05
CIITAP33076 MIR4753-201ENST00000585119 83 ntBASIC2.24□□□□□ -2.05
CIITAP33076 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CIITAP33076 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CIITAP33076 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CIITAP33076 Y_RNA.329-201ENST00000365209 107 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RNA5SP37-201ENST00000365420 130 ntBASIC2.23□□□□□ -2.05
CIITAP33076 Y_RNA.352-201ENST00000365439 102 ntBASIC2.23□□□□□ -2.05
CIITAP33076 Y_RNA.416-201ENST00000384014 113 ntBASIC2.23□□□□□ -2.05
CIITAP33076 Y_RNA.476-201ENST00000384347 108 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RNU6-482P-201ENST00000391068 107 ntBASIC2.23□□□□□ -2.05
CIITAP33076 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CIITAP33076 AL355796.1-201ENST00000406706 323 ntBASIC2.23□□□□□ -2.05
CIITAP33076 AL357139.1-201ENST00000407792 426 ntBASIC2.23□□□□□ -2.05
CIITAP33076 MIR1262-201ENST00000408276 93 ntBASIC2.23□□□□□ -2.05
CIITAP33076 AC123900.1-201ENST00000420390 96 ntBASIC2.23□□□□□ -2.05
CIITAP33076 POLR2KP2-201ENST00000438155 177 ntBASIC2.23□□□□□ -2.05
CIITAP33076 PRELID3BP1-201ENST00000457142 540 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RPS27P21-201ENST00000486977 252 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RNU6-388P-201ENST00000517012 105 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RNU6-389P-201ENST00000517048 105 ntBASIC2.23□□□□□ -2.05
CIITAP33076 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.23□□□□□ -2.05
CIITAP33076 AC087441.2-201ENST00000529141 262 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RPL21P9-201ENST00000556149 474 ntBASIC2.23□□□□□ -2.05
CIITAP33076 DEFB117-201ENST00000602356 141 ntBASIC2.23□□□□□ -2.05
CIITAP33076 AC025754.2-201ENST00000606491 432 ntBASIC2.23□□□□□ -2.05
CIITAP33076 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.23□□□□□ -2.05
CIITAP33076 snoZ196.1-201ENST00000625269 89 ntBASIC2.23□□□□□ -2.05
CIITAP33076 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.23□□□□□ -2.05
CIITAP33076 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CIITAP33076 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CIITAP33076 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-1235P-201ENST00000384559 107 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-651P-201ENST00000411040 105 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU2-14P-201ENST00000411053 191 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-57P-201ENST00000411348 103 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC108059.2-201ENST00000434626 151 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AL135790.2-201ENST00000437701 267 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-498P-201ENST00000459468 107 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC055731.1-201ENST00000474387 401 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC079804.2-201ENST00000490376 200 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-111P-201ENST00000517179 105 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC025647.1-201ENST00000517879 253 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC005357.1-201ENST00000588399 301 ntBASIC2.22□□□□□ -2.05
CIITAP33076 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.22□□□□□ -2.05
CIITAP33076 U2.14-201ENST00000615943 113 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AC078938.1-201ENST00000620993 318 ntBASIC2.22□□□□□ -2.05
CIITAP33076 AP000553.5-201ENST00000641933 54 ntBASIC2.22□□□□□ -2.05
CIITAP33076 RNU6-1266P-201ENST00000362794 105 ntBASIC2.21□□□□□ -2.06
CIITAP33076 RNU4-80P-201ENST00000363200 141 ntBASIC2.21□□□□□ -2.06
CIITAP33076 SNORD114-6-201ENST00000364393 72 ntBASIC2.21□□□□□ -2.06
CIITAP33076 Y_RNA.277-201ENST00000364754 102 ntBASIC2.21□□□□□ -2.06
CIITAP33076 RNU6-1318P-201ENST00000365389 103 ntBASIC2.21□□□□□ -2.06
CIITAP33076 RNU6-438P-201ENST00000365561 103 ntBASIC2.21□□□□□ -2.06
CIITAP33076 AL031003.1-201ENST00000404229 172 ntBASIC2.21□□□□□ -2.06
CIITAP33076 HMGN2P3-201ENST00000433603 273 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms