Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 MIR548Z-201ENST00000584743 97 ntBASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 MIR4753-201ENST00000585119 83 ntBASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 AP001486.2-201ENST00000561652 5113 ntBASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL25A1Q9BXS0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 Y_RNA.531-201ENST00000384589 121 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 MIR518F-201ENST00000384973 87 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 AC009238.1-201ENST00000442165 424 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 AC009237.6-201ENST00000446969 424 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 RPS27P22-201ENST00000478056 241 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 SNORD19.2-201ENST00000516978 73 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 MIR4694-201ENST00000578534 80 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 HMGN2P15-201ENST00000585707 270 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 SNORA62.6-201ENST00000606322 83 ntBASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL25A1Q9BXS0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 RNA5SP502-201ENST00000362694 119 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 RNU6-832P-201ENST00000363319 107 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 MIR124-3-201ENST00000384866 87 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 MIR577-201ENST00000385196 96 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 MRPL35P3-201ENST00000421557 364 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 SNRPGP10-201ENST00000432323 225 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 VDAC1P3-201ENST00000434069 851 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 SNRPGP13-201ENST00000442212 177 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC016717.1-201ENST00000448918 286 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 RNU2-11P-201ENST00000459191 187 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 SNORD108-201ENST00000459332 71 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC113410.1-201ENST00000505029 247 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC011602.1-201ENST00000546484 331 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC004486.1-201ENST00000546846 233 ntBASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL25A1Q9BXS0 RNU6-652P-201ENST00000365488 107 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 RNU6-418P-201ENST00000384035 107 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 MIR889-201ENST00000401280 79 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 RNU4-47P-201ENST00000410876 114 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 Y_RNA.620-201ENST00000411009 88 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AC023141.4-201ENST00000412031 328 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AC025445.1-201ENST00000502728 300 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 RNU7-6P-201ENST00000516845 62 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 RNU6-548P-201ENST00000517083 115 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 IGKV2-26-201ENST00000518305 343 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AC008507.4-201ENST00000585464 127 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 AC006160.2-201ENST00000637708 154 ntBASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL25A1Q9BXS0 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 Y_RNA.4-201ENST00000362333 112 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 RNU6-60P-201ENST00000364792 103 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 SNORA2.2-201ENST00000365473 135 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 Y_RNA.454-201ENST00000384224 113 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 RNU1-57P-201ENST00000384491 166 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 Y_RNA.507-201ENST00000384500 99 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 RNA5SP104-201ENST00000410989 118 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 AL441985.1-201ENST00000457727 251 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 RNU7-14P-201ENST00000459331 62 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 MIR4777-201ENST00000583710 86 ntBASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL25A1Q9BXS0 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL25A1Q9BXS0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL25A1Q9BXS0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL25A1Q9BXS0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 SNORA7.2-201ENST00000364446 145 ntBASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 RNU6-482P-201ENST00000391068 107 ntBASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 RNA5SP239-201ENST00000410218 129 ntBASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 AC016909.1-201ENST00000415916 166 ntBASIC3.65□□□□□ -1.83
COL25A1Q9BXS0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 459.2 ms