Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORA25.12-201ENST00000516202 82 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 RNU6-426P-201ENST00000516464 97 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 RNU6-341P-201ENST00000516973 96 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 Pinc.1-201ENST00000616452 154 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.67□□□□□ -1.98
CCDC140Q96MF4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC140Q96MF4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR208A-201ENST00000362287 71 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 RNU4-35P-201ENST00000362588 141 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 Y_RNA.432-201ENST00000384087 111 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR597-201ENST00000384968 97 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 SNORA12.1-201ENST00000390873 148 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 AL049830.1-201ENST00000468034 425 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 RN7SL807P-201ENST00000470923 297 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR548X2-201ENST00000579776 100 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR4425-201ENST00000580572 84 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR3922-201ENST00000585192 84 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 MIR6844-201ENST00000637122 62 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC140Q96MF4 ICE2P2-201ENST00000483823 2787 ntBASIC2.66□□□□□ -1.98
CCDC140Q96MF4 SNORA20-201ENST00000384662 132 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 RNU6-768P-201ENST00000384683 107 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MIR515-2-201ENST00000384883 83 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MIR515-1-201ENST00000384884 83 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MIR218-2-201ENST00000385006 110 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MIR29C-201ENST00000385231 88 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 SNORD17-201ENST00000390930 237 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MIR513C-201ENST00000401352 84 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 RN7SKP111-201ENST00000410349 271 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 RNU2-70P-201ENST00000410718 179 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 AC093578.1-201ENST00000415219 368 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 SNRPGP10-201ENST00000432323 225 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 RPS27P1-201ENST00000450552 247 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 SNORD11-201ENST00000459124 84 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 RPL23AP67-201ENST00000465341 474 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 HMGN1P7-201ENST00000491722 313 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC140Q96MF4 AC012314.7-201ENST00000619693 93 ntBASIC2.65□□□□□ -1.99
CCDC140Q96MF4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC140Q96MF4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC140Q96MF4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
CCDC140Q96MF4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 PWAR6-201ENST00000552334 4618 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 AL356274.2-201ENST00000624379 3752 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 MIR30E-201ENST00000362104 92 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 SNORA1B-201ENST00000362535 133 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.253-201ENST00000364562 112 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 SNORD50.2-201ENST00000365465 70 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.568-201ENST00000384742 113 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 SNORA11.4-201ENST00000408823 129 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 RNU4-43P-201ENST00000410628 137 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 PRSS3P4-201ENST00000453323 162 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 RNU7-149P-201ENST00000516739 59 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 AC024995.1-201ENST00000523014 93 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 MIR378D2-201ENST00000580636 98 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 U3.45-201ENST00000607547 219 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 RMST_8.1-201ENST00000610287 165 ntBASIC2.64□□□□□ -1.99
CCDC140Q96MF4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC140Q96MF4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MIR126-201ENST00000362291 85 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MIR184-201ENST00000384962 84 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MIR569-201ENST00000385228 96 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 RNU6-588P-201ENST00000410281 105 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 RNU2-55P-201ENST00000411146 174 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 RNU7-94P-201ENST00000459576 63 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 AC021205.2-201ENST00000480069 347 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 OR9P1P-201ENST00000496431 281 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 RNU6-197P-201ENST00000516680 100 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 RNU2-56P-201ENST00000516826 190 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MIR2276-201ENST00000516886 89 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 AC112693.2-201ENST00000556538 232 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MIR5094-201ENST00000578766 85 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 AC022513.1-201ENST00000624512 117 ntBASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms