Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SNORD17-201ENST00000390930 237 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 RN7SL504P-201ENST00000494496 287 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP236-201ENST00000516169 116 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 RNU2-34P-201ENST00000516534 121 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SH3RF1Q7Z6J0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 AL589743.1-201ENST00000551932 2712 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 Y_RNA.66-201ENST00000362862 102 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 AL590004.2-201ENST00000404787 371 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 RN7SL594P-201ENST00000470590 287 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 MRPS36P2-201ENST00000512569 299 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 MIR4425-201ENST00000580572 84 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 MIR3117-201ENST00000584034 78 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 RNVU1-4-201ENST00000612985 164 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 AC006386.2-201ENST00000624491 75 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 AC012005.1-201ENST00000624575 75 ntBASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
SH3RF1Q7Z6J0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 SNORA63.5-201ENST00000363548 123 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 RNU6-1124P-201ENST00000384169 107 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 RNA5SP252-201ENST00000391131 119 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 Y_RNA.621-201ENST00000411065 96 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 AC018634.1-201ENST00000437554 401 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 AC096725.1-201ENST00000514266 313 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 RNU6-521P-201ENST00000516663 105 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 AC026421.1-201ENST00000519101 163 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 MIR4325-201ENST00000583049 90 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 AL590808.1-201ENST00000618696 141 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 U6.73-201ENST00000619194 103 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 U4.6-201ENST00000621618 127 ntBASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SH3RF1Q7Z6J0 MFSD8-233ENST00000641482 4860 ntBASIC3.96□□□□□ -1.77
SH3RF1Q7Z6J0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.78-201ENST00000362970 110 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-944P-201ENST00000364023 107 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1292P-201ENST00000383856 107 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-1274P-201ENST00000384557 107 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 AC006445.1-201ENST00000491925 405 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 AC107294.3-201ENST00000609211 526 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 MIR7851-201ENST00000610611 160 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 AL137067.1-201ENST00000615933 120 ntBASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.96□□□□□ -1.78
SH3RF1Q7Z6J0 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 AL365361.1-201ENST00000566942 3481 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-486P-201ENST00000363116 107 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.221-201ENST00000364248 96 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 AC016909.1-201ENST00000415916 166 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 U3.44-201ENST00000458938 192 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 AC093663.1-201ENST00000497190 394 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 MIR2276-201ENST00000516886 89 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
SH3RF1Q7Z6J0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 MIR30E-201ENST00000362104 92 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 SNORA1-201ENST00000384107 130 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 MIR184-201ENST00000384962 84 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 AL031121.1-201ENST00000406553 254 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 MIR1253-201ENST00000408273 105 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 SNORA19.1-201ENST00000410656 129 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 AL357552.1-201ENST00000445254 415 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 S100A11P2-201ENST00000467589 312 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-586P-201ENST00000517265 104 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 MIR3202-2-201ENST00000635980 79 ntBASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SH3RF1Q7Z6J0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 Y_RNA.342-201ENST00000365352 113 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 MIR520G-201ENST00000385064 90 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 RNU6-972P-201ENST00000391208 107 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 RNU11-5P-201ENST00000391216 129 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 MIR1255A-201ENST00000408338 113 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 AC107297.1-201ENST00000459991 176 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 SNORA70.14-201ENST00000516205 110 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 NDUFB9P3-201ENST00000521269 501 ntBASIC3.93□□□□□ -1.78
SH3RF1Q7Z6J0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms