Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSX2P35548 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
MSX2P35548 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
MSX2P35548 MIR367-201ENST00000362299 68 ntBASIC2.72□□□□□ -1.97
MSX2P35548 RNU6-643P-201ENST00000384018 107 ntBASIC2.72□□□□□ -1.97
MSX2P35548 SNORA54-201ENST00000384281 123 ntBASIC2.72□□□□□ -1.97
MSX2P35548 RNU6-1228P-201ENST00000391014 107 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AL606845.1-201ENST00000404881 255 ntBASIC2.72□□□□□ -1.97
MSX2P35548 MIR1294-201ENST00000408503 142 ntBASIC2.72□□□□□ -1.97
MSX2P35548 U6atac.2-201ENST00000408644 118 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC006461.1-201ENST00000412637 326 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.72□□□□□ -1.97
MSX2P35548 RPL30P4-201ENST00000429309 333 ntBASIC2.72□□□□□ -1.97
MSX2P35548 HSPE1P21-201ENST00000438283 308 ntBASIC2.72□□□□□ -1.97
MSX2P35548 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.72□□□□□ -1.97
MSX2P35548 AL121914.1-201ENST00000450188 156 ntBASIC2.72□□□□□ -1.97
MSX2P35548 SNORD65B-201ENST00000459126 73 ntBASIC2.72□□□□□ -1.97
MSX2P35548 RNU6-221P-201ENST00000459541 99 ntBASIC2.72□□□□□ -1.97
MSX2P35548 RPS26P55-201ENST00000471178 356 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC083906.5-201ENST00000503722 328 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC023141.11-201ENST00000508864 202 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.72□□□□□ -1.97
MSX2P35548 AP003357.1-201ENST00000604497 148 ntBASIC2.72□□□□□ -1.97
MSX2P35548 snoZ196.1-201ENST00000625269 89 ntBASIC2.72□□□□□ -1.97
MSX2P35548 AC068647.2-201ENST00000637380 353 ntBASIC2.72□□□□□ -1.97
MSX2P35548 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.72□□□□□ -1.97
MSX2P35548 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.72□□□□□ -1.97
MSX2P35548 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
MSX2P35548 Y_RNA.81-201ENST00000362997 102 ntBASIC2.71□□□□□ -1.98
MSX2P35548 Y_RNA.218-201ENST00000364218 104 ntBASIC2.71□□□□□ -1.98
MSX2P35548 RNU6-234P-201ENST00000365229 104 ntBASIC2.71□□□□□ -1.98
MSX2P35548 RNU6-407P-201ENST00000365280 104 ntBASIC2.71□□□□□ -1.98
MSX2P35548 RNU1-109P-201ENST00000383960 147 ntBASIC2.71□□□□□ -1.98
MSX2P35548 RNU6-975P-201ENST00000384296 105 ntBASIC2.71□□□□□ -1.98
MSX2P35548 SNORD14D-201ENST00000384390 87 ntBASIC2.71□□□□□ -1.98
MSX2P35548 SNORA20-201ENST00000384662 132 ntBASIC2.71□□□□□ -1.98
MSX2P35548 MIR513C-201ENST00000401352 84 ntBASIC2.71□□□□□ -1.98
MSX2P35548 MIR1278-201ENST00000408753 81 ntBASIC2.71□□□□□ -1.98
MSX2P35548 SNORA36B-201ENST00000410438 131 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC005326.1-201ENST00000429197 123 ntBASIC2.71□□□□□ -1.98
MSX2P35548 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC008267.6-201ENST00000441664 139 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC003982.1-202ENST00000469928 248 ntBASIC2.71□□□□□ -1.98
MSX2P35548 RNU6-971P-201ENST00000516920 106 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC109329.2-201ENST00000519658 482 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.71□□□□□ -1.98
MSX2P35548 MIR4753-201ENST00000585119 83 ntBASIC2.71□□□□□ -1.98
MSX2P35548 AC093732.2-201ENST00000607950 274 ntBASIC2.71□□□□□ -1.98
MSX2P35548 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
MSX2P35548 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.98
MSX2P35548 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
MSX2P35548 RNA5SP205-201ENST00000364653 136 ntBASIC2.7□□□□□ -1.98
MSX2P35548 RNU6-1323P-201ENST00000384025 107 ntBASIC2.7□□□□□ -1.98
MSX2P35548 RNU6-220P-201ENST00000390919 107 ntBASIC2.7□□□□□ -1.98
MSX2P35548 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.7□□□□□ -1.98
MSX2P35548 AC080013.2-201ENST00000460866 323 ntBASIC2.7□□□□□ -1.98
MSX2P35548 RPL36AP21-201ENST00000490372 323 ntBASIC2.7□□□□□ -1.98
MSX2P35548 AC010598.1-201ENST00000510378 103 ntBASIC2.7□□□□□ -1.98
MSX2P35548 AC112693.2-201ENST00000556538 232 ntBASIC2.7□□□□□ -1.98
MSX2P35548 AC127455.1-201ENST00000565496 145 ntBASIC2.7□□□□□ -1.98
MSX2P35548 LARP7P3-201ENST00000579888 337 ntBASIC2.7□□□□□ -1.98
MSX2P35548 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.7□□□□□ -1.98
MSX2P35548 AC009487.2-201ENST00000420969 6821 ntBASIC2.7□□□□□ -1.98
MSX2P35548 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSX2P35548 ZNF702P-202ENST00000434269 1966 ntBASIC2.69□□□□□ -1.98
MSX2P35548 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSX2P35548 RNU6-271P-201ENST00000363858 105 ntBASIC2.69□□□□□ -1.98
MSX2P35548 Y_RNA.261-201ENST00000364631 102 ntBASIC2.69□□□□□ -1.98
MSX2P35548 SNORD31B-201ENST00000364977 69 ntBASIC2.69□□□□□ -1.98
MSX2P35548 Y_RNA.420-201ENST00000384043 110 ntBASIC2.69□□□□□ -1.98
MSX2P35548 MIR518C-201ENST00000384822 101 ntBASIC2.69□□□□□ -1.98
MSX2P35548 RNU4-43P-201ENST00000410628 137 ntBASIC2.69□□□□□ -1.98
MSX2P35548 Y_RNA.629-201ENST00000411368 105 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.69□□□□□ -1.98
MSX2P35548 AC016717.1-201ENST00000448918 286 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AP001486.1-201ENST00000463339 476 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AC114982.1-201ENST00000469402 321 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AL049873.1-201ENST00000480540 376 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AC091826.1-201ENST00000514065 313 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AC018630.3-201ENST00000542637 96 ntBASIC2.69□□□□□ -1.98
MSX2P35548 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.69□□□□□ -1.98
MSX2P35548 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSX2P35548 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.69□□□□□ -1.98
MSX2P35548 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.68□□□□□ -1.98
MSX2P35548 AL356292.1-201ENST00000283110 373 ntBASIC2.68□□□□□ -1.98
MSX2P35548 Y_RNA.71-201ENST00000362892 104 ntBASIC2.68□□□□□ -1.98
MSX2P35548 RNU6-199P-201ENST00000362954 107 ntBASIC2.68□□□□□ -1.98
MSX2P35548 RNU6-728P-201ENST00000365375 104 ntBASIC2.68□□□□□ -1.98
MSX2P35548 Y_RNA.542-201ENST00000384641 111 ntBASIC2.68□□□□□ -1.98
MSX2P35548 RNU6-768P-201ENST00000384683 107 ntBASIC2.68□□□□□ -1.98
MSX2P35548 RNU6-57P-201ENST00000411348 103 ntBASIC2.68□□□□□ -1.98
MSX2P35548 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.68□□□□□ -1.98
MSX2P35548 EEF1B2P7-201ENST00000451177 676 ntBASIC2.68□□□□□ -1.98
MSX2P35548 AC016925.1-201ENST00000458303 298 ntBASIC2.68□□□□□ -1.98
MSX2P35548 AC105245.1-201ENST00000581934 244 ntBASIC2.68□□□□□ -1.98
MSX2P35548 MIR8057-201ENST00000620957 69 ntBASIC2.68□□□□□ -1.98
MSX2P35548 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
MSX2P35548 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
MSX2P35548 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
MSX2P35548 AL035425.3-201ENST00000564206 4996 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 142.5 ms