Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA40.15-201ENST00000516884 107 ntBASIC1.87□□□□□ -2.11
MSH3P20585 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.87□□□□□ -2.11
MSH3P20585 AC025647.1-201ENST00000517879 253 ntBASIC1.87□□□□□ -2.11
MSH3P20585 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.87□□□□□ -2.11
MSH3P20585 MIR4300-201ENST00000581016 96 ntBASIC1.87□□□□□ -2.11
MSH3P20585 AC022441.3-201ENST00000605737 136 ntBASIC1.87□□□□□ -2.11
MSH3P20585 AC130454.1-201ENST00000622948 401 ntBASIC1.87□□□□□ -2.11
MSH3P20585 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
MSH3P20585 Y_RNA.19-201ENST00000362462 99 ntBASIC1.86□□□□□ -2.11
MSH3P20585 SNORD115-3-201ENST00000363100 82 ntBASIC1.86□□□□□ -2.11
MSH3P20585 Y_RNA.133-201ENST00000363428 110 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNA5SP493-201ENST00000364115 91 ntBASIC1.86□□□□□ -2.11
MSH3P20585 MIR583-201ENST00000384846 75 ntBASIC1.86□□□□□ -2.11
MSH3P20585 MIR29C-201ENST00000385231 88 ntBASIC1.86□□□□□ -2.11
MSH3P20585 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
MSH3P20585 SNORA40.19-201ENST00000390846 128 ntBASIC1.86□□□□□ -2.11
MSH3P20585 SNORD115-46-201ENST00000390982 71 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNA5SP489-201ENST00000410986 109 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNU6-1199P-201ENST00000411249 104 ntBASIC1.86□□□□□ -2.11
MSH3P20585 AC096920.1-201ENST00000423991 241 ntBASIC1.86□□□□□ -2.11
MSH3P20585 LINC01399-202ENST00000458450 244 ntBASIC1.86□□□□□ -2.11
MSH3P20585 snoU13.26-201ENST00000459452 105 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNA5SP182-201ENST00000516064 82 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNY3P15-201ENST00000516297 97 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNU6-966P-201ENST00000516479 104 ntBASIC1.86□□□□□ -2.11
MSH3P20585 RNU2-12P-201ENST00000517216 168 ntBASIC1.86□□□□□ -2.11
MSH3P20585 MIR4287-201ENST00000579398 78 ntBASIC1.86□□□□□ -2.11
MSH3P20585 Y_RNA.26-201ENST00000362539 101 ntBASIC1.85□□□□□ -2.11
MSH3P20585 RNU6-806P-201ENST00000365147 105 ntBASIC1.85□□□□□ -2.11
MSH3P20585 RNU6-1175P-201ENST00000365200 107 ntBASIC1.85□□□□□ -2.11
MSH3P20585 snosnR66.1-201ENST00000391095 99 ntBASIC1.85□□□□□ -2.11
MSH3P20585 RNU2-54P-201ENST00000410299 190 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AC016909.1-201ENST00000415916 166 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AC060773.1-201ENST00000421698 310 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AL731563.1-201ENST00000442202 214 ntBASIC1.85□□□□□ -2.11
MSH3P20585 YWHAEP4-201ENST00000505390 198 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AC025465.3-201ENST00000510570 311 ntBASIC1.85□□□□□ -2.11
MSH3P20585 MRPS17P9-201ENST00000511924 393 ntBASIC1.85□□□□□ -2.11
MSH3P20585 RNU6-1143P-201ENST00000516125 104 ntBASIC1.85□□□□□ -2.11
MSH3P20585 RNU6-635P-201ENST00000516651 102 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AC110588.1-201ENST00000559699 137 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AC008269.2-201ENST00000561915 1105 ntBASIC1.85□□□□□ -2.11
MSH3P20585 MIR3169-201ENST00000578032 83 ntBASIC1.85□□□□□ -2.11
MSH3P20585 AL590240.4-201ENST00000616908 390 ntBASIC1.85□□□□□ -2.11
MSH3P20585 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
MSH3P20585 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
MSH3P20585 AL159152.1-201ENST00000635019 2587 ntBASIC1.84□□□□□ -2.11
MSH3P20585 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH3P20585 RNU1-58P-201ENST00000362413 163 ntBASIC1.84□□□□□ -2.11
MSH3P20585 Y_RNA.64-201ENST00000362845 102 ntBASIC1.84□□□□□ -2.11
MSH3P20585 RNU6-1309P-201ENST00000363305 108 ntBASIC1.84□□□□□ -2.11
MSH3P20585 Y_RNA.243-201ENST00000364481 109 ntBASIC1.84□□□□□ -2.11
MSH3P20585 SNORA72.2-201ENST00000365028 127 ntBASIC1.84□□□□□ -2.11
MSH3P20585 Y_RNA.446-201ENST00000384178 104 ntBASIC1.84□□□□□ -2.11
MSH3P20585 Y_RNA.574-201ENST00000384766 95 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AL512604.1-201ENST00000404812 257 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.84□□□□□ -2.11
MSH3P20585 AL390729.2-201ENST00000416137 156 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.84□□□□□ -2.11
MSH3P20585 AC008134.1-201ENST00000420943 193 ntBASIC1.84□□□□□ -2.11
MSH3P20585 HMGN2P3-201ENST00000433603 273 ntBASIC1.84□□□□□ -2.11
MSH3P20585 HMGN2P5-201ENST00000436882 273 ntBASIC1.84□□□□□ -2.11
MSH3P20585 DYNLT3P2-201ENST00000442517 295 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH3P20585 AC098869.1-201ENST00000481627 292 ntBASIC1.84□□□□□ -2.11
MSH3P20585 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH3P20585 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.84□□□□□ -2.11
MSH3P20585 MIR3684-201ENST00000579779 74 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC005828.6-201ENST00000606610 232 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC011373.1-201ENST00000607270 237 ntBASIC1.84□□□□□ -2.11
MSH3P20585 MIR376A1-201ENST00000616574 68 ntBASIC1.84□□□□□ -2.11
MSH3P20585 AC006001.4-201ENST00000622243 395 ntBASIC1.84□□□□□ -2.11
MSH3P20585 U6.115-201ENST00000636045 103 ntBASIC1.84□□□□□ -2.11
MSH3P20585 ZNF702P-202ENST00000434269 1966 ntBASIC1.84□□□□□ -2.11
MSH3P20585 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH3P20585 RNA5SP276-201ENST00000362580 94 ntBASIC1.83□□□□□ -2.12
MSH3P20585 Y_RNA.176-201ENST00000363815 109 ntBASIC1.83□□□□□ -2.12
MSH3P20585 Y_RNA.222-201ENST00000364264 102 ntBASIC1.83□□□□□ -2.12
MSH3P20585 SNORA16.1-201ENST00000364597 132 ntBASIC1.83□□□□□ -2.12
MSH3P20585 RNU6-1240P-201ENST00000365155 104 ntBASIC1.83□□□□□ -2.12
MSH3P20585 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.83□□□□□ -2.12
MSH3P20585 SNORA40.18-201ENST00000391200 128 ntBASIC1.83□□□□□ -2.12
MSH3P20585 MIR1283-2-201ENST00000408621 87 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH3P20585 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH3P20585 BX510359.4-201ENST00000423750 193 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AL121890.1-201ENST00000435457 205 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AL353689.1-201ENST00000438895 199 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.83□□□□□ -2.12
MSH3P20585 HMGB3P17-201ENST00000504195 649 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AC107393.1-201ENST00000512403 346 ntBASIC1.83□□□□□ -2.12
MSH3P20585 RNU7-110P-201ENST00000516891 62 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AC012493.3-201ENST00000604494 112 ntBASIC1.83□□□□□ -2.12
MSH3P20585 AL162730.1-201ENST00000605734 292 ntBASIC1.83□□□□□ -2.12
MSH3P20585 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH3P20585 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
MSH3P20585 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
MSH3P20585 SNORD81.1-201ENST00000363064 77 ntBASIC1.82□□□□□ -2.12
MSH3P20585 RNU6-238P-201ENST00000363313 106 ntBASIC1.82□□□□□ -2.12
MSH3P20585 RNU4-30P-201ENST00000410245 143 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms