Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR4438-201ENST00000585271 93 ntBASIC2.53□□□□□ -2
HOXA3O43365 AC093732.2-201ENST00000607950 274 ntBASIC2.53□□□□□ -2
HOXA3O43365 MIR7106-201ENST00000612419 65 ntBASIC2.53□□□□□ -2
HOXA3O43365 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXA3O43365 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HOXA3O43365 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA3O43365 RNU1-22P-201ENST00000363334 158 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-674P-201ENST00000363831 107 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 SNORA80A-201ENST00000363922 136 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-151P-201ENST00000364158 107 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 SNORA71.1-201ENST00000364523 117 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-818P-201ENST00000364837 108 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 Y_RNA.500-201ENST00000384466 111 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 MIR592-201ENST00000384959 97 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 MIR1253-201ENST00000408273 105 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 AC060773.1-201ENST00000421698 310 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-437P-201ENST00000459408 95 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-561P-201ENST00000516222 102 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 RNU6-856P-201ENST00000516959 98 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 AC245166.1-201ENST00000521012 253 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 Y_RNA.778-201ENST00000620203 90 ntBASIC2.52□□□□□ -2.01
HOXA3O43365 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HOXA3O43365 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA3O43365 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
HOXA3O43365 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
HOXA3O43365 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA3O43365 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
HOXA3O43365 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
HOXA3O43365 SNORD56.3-201ENST00000363507 71 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 Y_RNA.215-201ENST00000364204 112 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 Y_RNA.343-201ENST00000365354 112 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 SNORA25B-201ENST00000365507 128 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA3O43365 Y_RNA.488-201ENST00000384403 102 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 Y_RNA.510-201ENST00000384511 114 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 AL445687.1-201ENST00000439946 251 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 AC097462.1-201ENST00000514125 324 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 SNORD116-25-201ENST00000516517 92 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 RNU7-172P-201ENST00000517125 64 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 AC104027.1-201ENST00000521887 300 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA3O43365 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA3O43365 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.51□□□□□ -2.01
HOXA3O43365 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
HOXA3O43365 AC138915.1-201ENST00000565427 1685 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA3O43365 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA3O43365 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
HOXA3O43365 SNORA5B-201ENST00000363786 132 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 SNORA72-201ENST00000384339 132 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 MIR1278-201ENST00000408753 81 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 TRIAP1P1-201ENST00000427062 225 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 AC104332.2-201ENST00000429959 156 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 UBE2DNL-203ENST00000474922 222 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 AC107027.2-201ENST00000512197 115 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 RNA5SP385-201ENST00000515947 110 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 MIR4513-201ENST00000581077 86 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 U6.73-201ENST00000619194 103 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA3O43365 AC012640.5-201ENST00000623897 319 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 MIR622-201ENST00000638396 96 ntBASIC2.5□□□□□ -2.01
HOXA3O43365 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA3O43365 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HOXA3O43365 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXA3O43365 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
HOXA3O43365 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXA3O43365 MAPK10-266ENST00000641066 6555 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 AC008264.2-201ENST00000610193 3731 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 SNORD113-1-201ENST00000365321 69 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 RNU6-728P-201ENST00000365375 104 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 RNU6-81P-201ENST00000365608 104 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 RNY3P5-201ENST00000384127 102 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 Y_RNA.497-201ENST00000384447 98 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 RNU6-376P-201ENST00000384731 106 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 MIR627-201ENST00000384979 97 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 MIR15B-201ENST00000385045 98 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 SNORD67-201ENST00000390833 111 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 RNU6-131P-201ENST00000391144 107 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 MIR548I2-201ENST00000408348 149 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 AC006461.1-201ENST00000412637 326 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 AC244505.4-201ENST00000434905 287 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 SSXP5-201ENST00000443473 287 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXA3O43365 AC011406.1-201ENST00000512440 370 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 MIR2276-201ENST00000516886 89 ntBASIC2.49□□□□□ -2.01
HOXA3O43365 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXA3O43365 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.49□□□□□ -2.01
HOXA3O43365 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXA3O43365 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HOXA3O43365 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXA3O43365 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 MIR22-201ENST00000362190 85 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 RNU4-41P-201ENST00000364426 143 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 Y_RNA.337-201ENST00000365312 102 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 RNU6-417P-201ENST00000384712 107 ntBASIC2.48□□□□□ -2.01
HOXA3O43365 RNA5SP496-201ENST00000391240 109 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 207 ms