Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SCARNA17.4-201ENST00000614296 143 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 SNORA54-201ENST00000384281 123 ntBASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-221P-201ENST00000459541 99 ntBASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 AP001486.1-201ENST00000463339 476 ntBASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 AC104027.1-201ENST00000521887 300 ntBASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.85□□□□□ -1.79
CHMP3Q9Y3E7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 MIR22-201ENST00000362190 85 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 RNU1-72P-201ENST00000362976 153 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 SNORD56.3-201ENST00000363507 71 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-234P-201ENST00000365229 104 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 RNY3P5-201ENST00000384127 102 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-975P-201ENST00000384296 105 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 MIR300-201ENST00000401138 83 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AC010154.1-201ENST00000425857 269 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AC010598.1-201ENST00000510378 103 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 RNA5SP20-201ENST00000515976 84 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AC093732.2-201ENST00000607950 274 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 MIR6129-201ENST00000616087 109 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 AL137790.1-201ENST00000634283 177 ntBASIC3.84□□□□□ -1.79
CHMP3Q9Y3E7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
CHMP3Q9Y3E7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 AL159152.1-201ENST00000635019 2587 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-235P-201ENST00000362644 107 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RNU4-41P-201ENST00000364426 143 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-1056P-201ENST00000383996 107 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 Y_RNA.563-201ENST00000384707 108 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 MIR1294-201ENST00000408503 142 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RNA5SP511-201ENST00000410487 115 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 COTL1P1-201ENST00000422309 375 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 AC080013.2-201ENST00000460866 323 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 AL049873.1-201ENST00000480540 376 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RAC1P5-201ENST00000512182 576 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 RNA5SP76-201ENST00000516277 87 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 SCARNA20.6-201ENST00000517251 106 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 AC109329.2-201ENST00000519658 482 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 MIR378D2-201ENST00000580636 98 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 MIR622-201ENST00000638396 96 ntBASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CHMP3Q9Y3E7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-271P-201ENST00000363858 105 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 SNORA14A-201ENST00000364773 135 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-418P-201ENST00000384035 107 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 SNORA44-201ENST00000384584 132 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 RN7SKP101-201ENST00000411376 320 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 MRPS36P2-201ENST00000512569 299 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 EIF4BP1-201ENST00000554881 351 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AL049861.1-201ENST00000603130 150 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AL021707.8-201ENST00000609428 183 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 GABRG2-229ENST00000641017 3628 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 AC058791.1-201ENST00000608412 3198 ntBASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP3Q9Y3E7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-834P-201ENST00000362367 110 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-136P-201ENST00000384663 107 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 MIR634-201ENST00000385208 97 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 AC025750.2-201ENST00000442609 450 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 RPL36AP21-201ENST00000490372 323 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 AC083906.5-201ENST00000503722 328 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 RNU7-116P-201ENST00000516940 62 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 AC002064.3-201ENST00000623448 346 ntBASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CHMP3Q9Y3E7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RNU1-105P-201ENST00000363470 161 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-597P-201ENST00000365620 102 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-484P-201ENST00000384016 107 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 MIR181A2-201ENST00000384863 110 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RN7SKP220-201ENST00000410611 288 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-1064P-201ENST00000410626 104 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC016909.1-201ENST00000415916 166 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AL158823.1-201ENST00000418441 478 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC010531.2-201ENST00000465012 153 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 SCARNA13-201ENST00000516672 275 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC090142.3-201ENST00000519012 385 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC015720.1-201ENST00000565251 277 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms