Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 MIR424-201ENST00000362227 98 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 RNU4-42P-201ENST00000364738 142 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 RNU6-699P-201ENST00000517081 110 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 CYCSP23-201ENST00000519781 313 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 AP002001.1-203ENST00000534002 267 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 AC016925.2-201ENST00000605108 242 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 U6.108-201ENST00000637764 58 ntBASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CPSF3Q9UKF6 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 RNU6-490P-201ENST00000362985 107 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 RNU4-73P-201ENST00000363164 141 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 RNU6-1264P-201ENST00000383891 107 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MTCO2P27-201ENST00000420740 428 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MTND4P28-201ENST00000426217 387 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 PCNPP5-201ENST00000452246 481 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 AC074133.1-201ENST00000515696 183 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 SNORA40.9-201ENST00000515895 93 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 RNU7-4P-201ENST00000516961 62 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MIR2355-201ENST00000517199 87 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 AC018448.1-201ENST00000552843 316 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MIR4303-201ENST00000581299 66 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MIR4795-201ENST00000584182 89 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 BX248123.2-201ENST00000606318 124 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 AC138305.3-201ENST00000624988 240 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.69□□□□□ -2.14
CPSF3Q9UKF6 MTND5P10-201ENST00000603719 1809 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 Y_RNA.187-201ENST00000363918 113 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 HSPE1P9-201ENST00000440046 311 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 RNU7-169P-201ENST00000459456 61 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 RAB11AP2-201ENST00000545905 639 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 AC022432.1-201ENST00000595739 310 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 AL645939.4-201ENST00000604495 135 ntBASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.68□□□□□ -2.14
CPSF3Q9UKF6 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 MIR126-201ENST00000362291 85 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 RNU6-1115P-201ENST00000362490 106 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 RNU6-1266P-201ENST00000362794 105 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 RNU6-60P-201ENST00000364792 103 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 SNORA72.2-201ENST00000365028 127 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 Y_RNA.314-201ENST00000365114 102 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 Y_RNA.463-201ENST00000384271 102 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 MIR515-2-201ENST00000384883 83 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 MIR515-1-201ENST00000384884 83 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 MIR1323-201ENST00000408090 73 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 SNORD12B-201ENST00000410433 91 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 CHEK2P4-201ENST00000450340 246 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 SNORD65B-201ENST00000459126 73 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 RNU7-128P-201ENST00000517247 62 ntBASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.67□□□□□ -2.14
CPSF3Q9UKF6 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 MIR410-201ENST00000362222 80 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 MIR517C-201ENST00000385103 95 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 RNU2-7P-201ENST00000410794 178 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 EBAG9P1-201ENST00000418955 543 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 RAB28P5-201ENST00000427490 651 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC108667.1-201ENST00000428618 249 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC096644.2-201ENST00000429278 159 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC005002.2-201ENST00000438228 269 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC099799.1-201ENST00000439809 192 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 RNU6-625P-201ENST00000459412 107 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC144568.1-201ENST00000520139 137 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC024995.1-201ENST00000523014 93 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 SNORD53B-201ENST00000577887 78 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 MIR4422-201ENST00000581938 83 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 AL117336.2-201ENST00000602435 335 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
CPSF3Q9UKF6 RNU4-79P-201ENST00000362764 141 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 RNU4-13P-201ENST00000364019 141 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 RNU1-42P-201ENST00000364033 160 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 RNU6-454P-201ENST00000364292 107 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 SNORA4.2-201ENST00000365313 147 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.496-201ENST00000384444 101 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.498-201ENST00000384460 102 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 MT-TD-201ENST00000387419 68 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.605-201ENST00000410577 105 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AC236972.2-201ENST00000434979 310 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AC069257.2-201ENST00000441819 155 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AL606517.2-201ENST00000442855 241 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AC073910.1-201ENST00000445047 438 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AL163195.1-201ENST00000496941 348 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 HMGN1P13-201ENST00000505795 138 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 AC027419.1-201ENST00000522976 328 ntBASIC1.65□□□□□ -2.15
CPSF3Q9UKF6 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 217.8 ms