Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 RNA5SP274-201ENST00000410484 108 ntBASIC3.69□□□□□ -1.82
ATG3Q9NT62 RNU6-383P-201ENST00000410864 94 ntBASIC3.69□□□□□ -1.82
ATG3Q9NT62 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.69□□□□□ -1.82
ATG3Q9NT62 RNU6-772P-201ENST00000516042 105 ntBASIC3.69□□□□□ -1.82
ATG3Q9NT62 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.69□□□□□ -1.82
ATG3Q9NT62 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 AC103988.1-201ENST00000566382 2177 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 RNU6-1205P-201ENST00000363625 106 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 Y_RNA.341-201ENST00000365341 102 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 RNU6-1336P-201ENST00000383886 109 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 RNU6-1228P-201ENST00000391014 107 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 CBX3P9-201ENST00000402326 552 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 RNA5SP390-201ENST00000410191 113 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 Y_RNA.630-201ENST00000411370 108 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 NDUFS5P4-201ENST00000412983 318 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 RPS27P1-201ENST00000450552 247 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.68□□□□□ -1.82
ATG3Q9NT62 MIR5582-201ENST00000579697 68 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 SNRPGP20-201ENST00000604477 205 ntBASIC3.68□□□□□ -1.82
ATG3Q9NT62 MIR196B-201ENST00000384852 84 ntBASIC3.67□□□□□ -1.82
ATG3Q9NT62 HMGN2P10-201ENST00000448085 265 ntBASIC3.67□□□□□ -1.82
ATG3Q9NT62 RNU5F-2P-201ENST00000516066 82 ntBASIC3.67□□□□□ -1.82
ATG3Q9NT62 SNORD33.1-201ENST00000516213 88 ntBASIC3.67□□□□□ -1.82
ATG3Q9NT62 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.67□□□□□ -1.82
ATG3Q9NT62 MIR6715A-201ENST00000615929 79 ntBASIC3.67□□□□□ -1.82
ATG3Q9NT62 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
ATG3Q9NT62 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ATG3Q9NT62 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
ATG3Q9NT62 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.66□□□□□ -1.82
ATG3Q9NT62 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ATG3Q9NT62 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
ATG3Q9NT62 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
ATG3Q9NT62 RNU6-1164P-201ENST00000364428 107 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 RNU6-728P-201ENST00000365375 104 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 Y_RNA.361-201ENST00000365515 120 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 AL138827.1-201ENST00000402666 306 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ATG3Q9NT62 MIR1261-201ENST00000408659 82 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 AIMP1P2-201ENST00000425294 312 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 AC245166.1-201ENST00000521012 253 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 AC021739.1-201ENST00000559631 174 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 AC104984.5-201ENST00000586878 94 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.66□□□□□ -1.82
ATG3Q9NT62 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.66□□□□□ -1.82
ATG3Q9NT62 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ATG3Q9NT62 CENPCP1-201ENST00000533085 2578 ntBASIC3.65□□□□□ -1.82
ATG3Q9NT62 AC093831.2-201ENST00000624393 3427 ntBASIC3.65□□□□□ -1.82
ATG3Q9NT62 RNA5SP432-201ENST00000362480 116 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 Y_RNA.280-201ENST00000364765 112 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 Y_RNA.456-201ENST00000384232 111 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 SNORA46-201ENST00000384762 135 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 MIR9-1-201ENST00000385198 89 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 SNORA75.5-201ENST00000391291 81 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 RNU6-710P-201ENST00000410424 105 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 AIG1P1-201ENST00000503376 148 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 RNA5SP385-201ENST00000515947 110 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 ACA59.2-201ENST00000517061 156 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 AC006199.1-201ENST00000548728 219 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 MIR4435-1-201ENST00000582552 80 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 AL031274.2-201ENST00000599419 203 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 AC120024.3-201ENST00000603167 156 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 AC004832.5-201ENST00000608677 401 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 AC110079.1-202ENST00000635213 138 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 U6.115-201ENST00000636045 103 ntBASIC3.65□□□□□ -1.83
ATG3Q9NT62 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.65□□□□□ -1.83
ATG3Q9NT62 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.64□□□□□ -1.83
ATG3Q9NT62 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNA5SP139-201ENST00000364340 117 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 U8.7-201ENST00000364940 136 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RPL21P3-201ENST00000395517 478 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNU4-43P-201ENST00000410628 137 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RN7SKP123-201ENST00000410732 291 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 AC023141.4-201ENST00000412031 328 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RPS3P1-201ENST00000456781 192 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNU1-41P-201ENST00000516161 162 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNU1-48P-201ENST00000516400 162 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 RNU6-844P-201ENST00000517175 102 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 MIR4724-201ENST00000579485 89 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 MIR5688-201ENST00000580619 83 ntBASIC3.64□□□□□ -1.83
ATG3Q9NT62 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.64□□□□□ -1.83
ATG3Q9NT62 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
ATG3Q9NT62 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.64□□□□□ -1.83
ATG3Q9NT62 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
ATG3Q9NT62 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
ATG3Q9NT62 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.63□□□□□ -1.83
ATG3Q9NT62 RNU1-105P-201ENST00000363470 161 ntBASIC3.63□□□□□ -1.83
ATG3Q9NT62 U3.9-201ENST00000363823 204 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms