Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 RNU6-949P-201ENST00000384040 107 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 SNORA24B-201ENST00000384176 131 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 MIR554-201ENST00000384874 96 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 HMGN2P39-201ENST00000398005 273 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 RNU1-61P-201ENST00000516107 151 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC6.94□□□□□ -1.3
SENP3Q9H4L4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
SENP3Q9H4L4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
SENP3Q9H4L4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SENP3Q9H4L4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SENP3Q9H4L4 RNU6-654P-201ENST00000364373 107 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 RNU2-48P-201ENST00000410694 191 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 AC016831.4-201ENST00000438302 307 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 AC026726.1-201ENST00000512859 601 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 MIR2116-201ENST00000517221 80 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 MIR6839-201ENST00000620425 113 ntBASIC6.93□□□□□ -1.3
SENP3Q9H4L4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SENP3Q9H4L4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SENP3Q9H4L4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 RPS12P10-201ENST00000427031 377 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 RNU7-106P-201ENST00000459514 67 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 AP000873.1-201ENST00000463987 400 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 SCARNA22-201ENST00000503991 125 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 AC244505.7-201ENST00000599675 272 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 AC114781.5-201ENST00000615297 108 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 AL662814.1-201ENST00000617364 121 ntBASIC6.92□□□□□ -1.3
SENP3Q9H4L4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
SENP3Q9H4L4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 snoU13.29-201ENST00000459370 104 ntBASIC6.91□□□□□ -1.3
SENP3Q9H4L4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.91□□□□□ -1.3
SENP3Q9H4L4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.9□□□□□ -1.3
SENP3Q9H4L4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC6.9□□□□□ -1.3
SENP3Q9H4L4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.9□□□□□ -1.3
SENP3Q9H4L4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SENP3Q9H4L4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SENP3Q9H4L4 RPS27P16-201ENST00000425758 201 ntBASIC6.9□□□□□ -1.3
SENP3Q9H4L4 SNORA31.10-201ENST00000516482 106 ntBASIC6.9□□□□□ -1.3
SENP3Q9H4L4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SENP3Q9H4L4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
SENP3Q9H4L4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SENP3Q9H4L4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.89□□□□□ -1.31
SENP3Q9H4L4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC6.89□□□□□ -1.31
SENP3Q9H4L4 SNORA71.3-201ENST00000362582 128 ntBASIC6.89□□□□□ -1.31
SENP3Q9H4L4 RNA5SP372-201ENST00000390836 115 ntBASIC6.89□□□□□ -1.31
SENP3Q9H4L4 MIR6133-201ENST00000617057 108 ntBASIC6.89□□□□□ -1.31
SENP3Q9H4L4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
SENP3Q9H4L4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC6.89□□□□□ -1.31
SENP3Q9H4L4 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 SNORA31-201ENST00000362607 130 ntBASIC6.88□□□□□ -1.31
SENP3Q9H4L4 CKS1BP2-201ENST00000497342 240 ntBASIC6.88□□□□□ -1.31
SENP3Q9H4L4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 RNU6-122P-201ENST00000516818 107 ntBASIC6.88□□□□□ -1.31
SENP3Q9H4L4 MIR3124-201ENST00000582636 67 ntBASIC6.88□□□□□ -1.31
SENP3Q9H4L4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SENP3Q9H4L4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 RNA5SP116-201ENST00000516132 98 ntBASIC6.87□□□□□ -1.31
SENP3Q9H4L4 UBL5P2-201ENST00000583788 219 ntBASIC6.87□□□□□ -1.31
SENP3Q9H4L4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
SENP3Q9H4L4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms