Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC022695.1-201ENST00000522089 237 ntBASIC3.42□□□□□ -1.86
COL8A1P27658 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.42□□□□□ -1.86
COL8A1P27658 MIR4438-201ENST00000585271 93 ntBASIC3.42□□□□□ -1.86
COL8A1P27658 uc_338.32-201ENST00000615087 172 ntBASIC3.42□□□□□ -1.86
COL8A1P27658 RN7SL853P-201ENST00000617250 223 ntBASIC3.42□□□□□ -1.86
COL8A1P27658 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL8A1P27658 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL8A1P27658 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL8A1P27658 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.42□□□□□ -1.86
COL8A1P27658 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL8A1P27658 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.41□□□□□ -1.86
COL8A1P27658 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL8A1P27658 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
COL8A1P27658 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.41□□□□□ -1.86
COL8A1P27658 RNU6-363P-201ENST00000362895 105 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 Y_RNA.155-201ENST00000363632 101 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 SNORD74.4-201ENST00000364129 80 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 SNORD45B-201ENST00000364617 72 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 RNU6-409P-201ENST00000384114 104 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 SNORD38C-201ENST00000384381 69 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 MIR513A2-201ENST00000385249 127 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 MIR889-201ENST00000401280 79 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 MIR1179-201ENST00000408703 91 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 Y_RNA.607-201ENST00000410597 98 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 RNA5SP120-201ENST00000410900 112 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 RN7SKP167-201ENST00000411047 285 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 AC023141.4-201ENST00000412031 328 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 RNU6-1096P-201ENST00000517089 102 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.41□□□□□ -1.86
COL8A1P27658 HIGD1AP1-201ENST00000550979 275 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.41□□□□□ -1.86
COL8A1P27658 MIR3618-201ENST00000580330 88 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.41□□□□□ -1.86
COL8A1P27658 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.41□□□□□ -1.86
COL8A1P27658 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.41□□□□□ -1.86
COL8A1P27658 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL8A1P27658 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL8A1P27658 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.86
COL8A1P27658 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL8A1P27658 AL136964.1-201ENST00000622038 2990 ntBASIC3.4□□□□□ -1.86
COL8A1P27658 AP003122.5-201ENST00000527668 3766 ntBASIC3.4□□□□□ -1.86
COL8A1P27658 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
COL8A1P27658 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
COL8A1P27658 RNU6-661P-201ENST00000362409 107 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 SNORD115-19-201ENST00000363098 82 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 SNORD115-18-201ENST00000363293 82 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 SNORD115-17-201ENST00000364612 82 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 Y_RNA.510-201ENST00000384511 114 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 RNU6-1235P-201ENST00000384559 107 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 MIR520G-201ENST00000385064 90 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
COL8A1P27658 RNU6-887P-201ENST00000410660 100 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 Y_RNA.611-201ENST00000410682 108 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.4□□□□□ -1.87
COL8A1P27658 AC016909.1-201ENST00000415916 166 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 RNU6-498P-201ENST00000459468 107 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.4□□□□□ -1.87
COL8A1P27658 AC023141.12-201ENST00000512399 199 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 RNU6-1006P-201ENST00000516998 103 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 AC087685.1-201ENST00000587507 141 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 AC087741.2-201ENST00000619415 172 ntBASIC3.4□□□□□ -1.87
COL8A1P27658 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.4□□□□□ -1.87
COL8A1P27658 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL8A1P27658 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.4□□□□□ -1.87
COL8A1P27658 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL8A1P27658 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL8A1P27658 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL8A1P27658 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL8A1P27658 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.4□□□□□ -1.87
COL8A1P27658 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL8A1P27658 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
COL8A1P27658 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL8A1P27658 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.39□□□□□ -1.87
COL8A1P27658 RNA5SP399-201ENST00000364003 117 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 HMGN2P21-201ENST00000447764 270 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 SNRPGP3-201ENST00000469405 227 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 RNU2-35P-201ENST00000516446 142 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 YPEL5P3-201ENST00000547227 352 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 YPEL5P2-201ENST00000605553 359 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 AL359075.3-201ENST00000613288 217 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 MIR8057-201ENST00000620957 69 ntBASIC3.39□□□□□ -1.87
COL8A1P27658 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.39□□□□□ -1.87
COL8A1P27658 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL8A1P27658 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
COL8A1P27658 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.39□□□□□ -1.87
COL8A1P27658 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL8A1P27658 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL8A1P27658 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL8A1P27658 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL8A1P27658 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.38□□□□□ -1.87
COL8A1P27658 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL8A1P27658 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.38□□□□□ -1.87
COL8A1P27658 Y_RNA.4-201ENST00000362333 112 ntBASIC3.38□□□□□ -1.87
COL8A1P27658 RNA5SP432-201ENST00000362480 116 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms