Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-504P-201ENST00000516568 104 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AC026333.2-201ENST00000542164 106 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 MIR4474-201ENST00000579189 78 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AC019176.2-201ENST00000611579 315 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AC022149.2-201ENST00000621061 203 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU4-35P-201ENST00000362588 141 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNA5SP139-201ENST00000364340 117 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 SNORA14A-201ENST00000364773 135 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU6-32P-201ENST00000383948 107 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU6-13P-201ENST00000384248 107 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU6-12P-201ENST00000384604 107 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU6-41P-201ENST00000384741 107 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 MIR490-201ENST00000384865 128 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AL138878.1-201ENST00000405131 347 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 U6atac.2-201ENST00000408644 118 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AF228730.3-201ENST00000436691 102 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AC018634.1-201ENST00000437554 401 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AC009969.1-201ENST00000438726 172 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNU6-113P-201ENST00000516653 101 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNA5SP490-201ENST00000517141 136 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 AL022345.2-201ENST00000606307 135 ntBASIC3.66□□□□□ -1.82
USP3Q9Y6I4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.66□□□□□ -1.82
USP3Q9Y6I4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.65□□□□□ -1.82
USP3Q9Y6I4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
USP3Q9Y6I4 RNU6-309P-201ENST00000364573 106 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 RNU6-1292P-201ENST00000383856 107 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 AL031737.1-201ENST00000450125 223 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 AC025518.1-201ENST00000479856 347 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 SNORA4.4-201ENST00000515921 135 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.65□□□□□ -1.83
USP3Q9Y6I4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.65□□□□□ -1.83
USP3Q9Y6I4 MIR7975-201ENST00000619350 68 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 AC080128.1-201ENST00000474389 1917 ntBASIC3.65□□□□□ -1.83
USP3Q9Y6I4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP3Q9Y6I4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.65□□□□□ -1.83
USP3Q9Y6I4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP3Q9Y6I4 OTUD4P1-201ENST00000237841 3067 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 AC008555.8-201ENST00000623602 2168 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.66-201ENST00000362862 102 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 RNU1-72P-201ENST00000362976 153 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 HMGN2P18-201ENST00000450680 270 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 MRPS36P2-201ENST00000512569 299 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 RNU6-1146P-201ENST00000516282 102 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 IGKV2-26-201ENST00000518305 343 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 U6.73-201ENST00000619194 103 ntBASIC3.64□□□□□ -1.83
USP3Q9Y6I4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP3Q9Y6I4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AP001486.2-201ENST00000561652 5113 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RNU1-33P-201ENST00000364249 162 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RNU6-546P-201ENST00000383991 107 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 MIR1253-201ENST00000408273 105 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 MTCO1P44-201ENST00000441935 243 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RPS12P18-201ENST00000442381 270 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AP001486.1-201ENST00000463339 476 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RPS29P24-201ENST00000486345 171 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 SCARNA17.1-201ENST00000516211 143 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 SCARNA17.2-201ENST00000516334 143 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RNU6-781P-201ENST00000516377 101 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RNU6-856P-201ENST00000516959 98 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AC007751.1-201ENST00000529260 376 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 MIR3117-201ENST00000584034 78 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 SCARNA17.4-201ENST00000614296 143 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 UCA1.1-201ENST00000620952 75 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 MIR4679-1-201ENST00000637619 75 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 AC091564.4-201ENST00000533934 2194 ntBASIC3.63□□□□□ -1.83
USP3Q9Y6I4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
USP3Q9Y6I4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.62□□□□□ -1.83
USP3Q9Y6I4 SNORA63.1-201ENST00000362493 131 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 RNA5SP50-201ENST00000363731 107 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 SNORD6-201ENST00000365444 73 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 SNORD24-201ENST00000383884 75 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 Y_RNA.486-201ENST00000384398 107 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 AC009414.1-201ENST00000427200 443 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 AL021397.1-201ENST00000451806 248 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 CYCSP35-201ENST00000451978 304 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 HMGN2P7-201ENST00000456186 273 ntBASIC3.62□□□□□ -1.83
USP3Q9Y6I4 CYP2C59P-201ENST00000457790 269 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms