Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC107027.2-201ENST00000512197 115 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RN7SKP18-201ENST00000516005 275 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RNU6-406P-201ENST00000516470 107 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RNU6-1291P-201ENST00000516591 104 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 MIR3126-201ENST00000577443 74 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 MIR4738-201ENST00000579134 87 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 U7.8-201ENST00000619968 63 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AC039056.2-201ENST00000622261 511 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AP003355.3-201ENST00000623465 114 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 MTND1P7-201ENST00000632801 297 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 U2.22-201ENST00000636441 106 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 RNU6-23P-201ENST00000363283 107 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 RNU6-1080P-201ENST00000383982 107 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 SNORA5A-201ENST00000384111 134 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 SNORA8-201ENST00000384574 139 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 MIR449B-201ENST00000384995 97 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 RNA5SP496-201ENST00000391240 109 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 RNU1-95P-201ENST00000516357 160 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 SNORD116-25-201ENST00000516517 92 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 RNU1-128P-201ENST00000516704 160 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 SNORA31.26-201ENST00000517250 137 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 MIR3944-201ENST00000581277 108 ntBASIC2.75□□□□□ -1.97
CCDC140Q96MF4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC140Q96MF4 AC068647.1-201ENST00000489539 2265 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.400-201ENST00000383963 111 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 MIR613-201ENST00000385248 95 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 SNRPGP8-201ENST00000454064 226 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 SNORD105B-201ENST00000458770 79 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 RNU2-27P-201ENST00000516185 142 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AC093331.1-201ENST00000521474 169 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 MIR3186-201ENST00000577404 85 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.778-201ENST00000620203 90 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AC022149.2-201ENST00000621061 203 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 U4.6-201ENST00000621618 127 ntBASIC2.74□□□□□ -1.97
CCDC140Q96MF4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC140Q96MF4 AL161912.2-201ENST00000565707 3007 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 RNU6-1164P-201ENST00000364428 107 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 MIR7-3-201ENST00000384898 110 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 MIR520G-201ENST00000385064 90 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 CYCSP4-201ENST00000429682 331 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 AC023449.1-201ENST00000454464 154 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 RN7SL636P-201ENST00000497504 294 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 RNU6-1231P-201ENST00000517185 103 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 RNU7-128P-201ENST00000517247 62 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 AC007536.1-201ENST00000533382 349 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 MIR2681-201ENST00000581814 105 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 AC012442.3-202ENST00000636742 206 ntBASIC2.73□□□□□ -1.97
CCDC140Q96MF4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC140Q96MF4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC140Q96MF4 SNORA71.3-201ENST00000362582 128 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 RNU6-1209P-201ENST00000363655 107 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.337-201ENST00000365312 102 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.488-201ENST00000384403 102 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.521-201ENST00000384560 114 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 SNORA26.7-201ENST00000391288 122 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 AL117342.1-201ENST00000404861 406 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 RN7SKP284-201ENST00000411002 343 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 RN7SKP101-201ENST00000411376 320 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC140Q96MF4 TMSB4XP3-201ENST00000445144 114 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 AL049873.1-201ENST00000480540 376 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 AL163195.1-201ENST00000496941 348 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 RNA5SP272-201ENST00000516095 111 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 AC026333.2-201ENST00000542164 106 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.72□□□□□ -1.97
CCDC140Q96MF4 MIR4658-201ENST00000584344 65 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 MIR6079-201ENST00000635807 62 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 U6.108-201ENST00000637764 58 ntBASIC2.72□□□□□ -1.97
CCDC140Q96MF4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC140Q96MF4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms