Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL606517.2-201ENST00000442855 241 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.6□□□□□ -2.31
COL18A1P39060 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.6□□□□□ -2.31
COL18A1P39060 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.6□□□□□ -2.31
COL18A1P39060 AC025423.5-201ENST00000550230 219 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC026371.1-201ENST00000551867 419 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC100830.2-201ENST00000581636 240 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 MIR5692C1-201ENST00000585309 91 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC092747.3-201ENST00000603769 301 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 AC022217.4-201ENST00000604389 163 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SNORD11B-201ENST00000607707 90 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 U6.73-201ENST00000619194 103 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SNORD3E-202ENST00000627253 216 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 SCARNA4-201ENST00000629045 128 ntBASIC0.6□□□□□ -2.31
COL18A1P39060 RNU6-137P-201ENST00000363680 108 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 MIR521-1-201ENST00000384902 87 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 SNORD37.1-201ENST00000390968 65 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AC114737.2-201ENST00000421583 173 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AL606490.4-201ENST00000423117 127 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AC245047.3-201ENST00000429428 127 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.59□□□□□ -2.32
COL18A1P39060 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.59□□□□□ -2.32
COL18A1P39060 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.59□□□□□ -2.32
COL18A1P39060 CCDC34P1-201ENST00000507441 517 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 RNA5SP401-201ENST00000515920 127 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AL390123.1-201ENST00000603216 237 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AC073648.5-201ENST00000603502 305 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 AC139792.3-201ENST00000623525 224 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 MIR5087-201ENST00000635826 76 ntBASIC0.59□□□□□ -2.32
COL18A1P39060 Y_RNA.296-201ENST00000364930 108 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 Y_RNA.481-201ENST00000384373 102 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 RNU6-541P-201ENST00000384709 110 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 MIR653-201ENST00000385279 96 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 SNORD12-201ENST00000391002 90 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 RNU2-64P-201ENST00000411315 191 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.58□□□□□ -2.32
COL18A1P39060 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.58□□□□□ -2.32
COL18A1P39060 MTCO1P29-201ENST00000496868 288 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 AC091133.4-201ENST00000511142 308 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 SNORA25.14-201ENST00000516481 132 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.58□□□□□ -2.32
COL18A1P39060 SNORA28-201ENST00000606769 126 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 AC073534.2-201ENST00000620377 381 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 AC006504.8-201ENST00000621046 635 ntBASIC0.58□□□□□ -2.32
COL18A1P39060 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
COL18A1P39060 SNORD115-8-201ENST00000363856 82 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU4-76P-201ENST00000364509 141 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 SNORD115-38-201ENST00000365037 82 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 MIR200A-201ENST00000384875 90 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU6-325P-201ENST00000411132 105 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.57□□□□□ -2.32
COL18A1P39060 MTCO2P19-201ENST00000427513 598 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 TIMM9P3-201ENST00000428659 274 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL606489.2-201ENST00000433886 234 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC048334.1-201ENST00000477975 159 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AF186996.7-201ENST00000492781 209 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 Y_RNA.654-201ENST00000497848 106 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 SNORA31.2-201ENST00000516019 134 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 ACA64.5-201ENST00000516207 127 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC007834.2-201ENST00000536310 343 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.57□□□□□ -2.32
COL18A1P39060 AC010620.1-201ENST00000601088 1102 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC017083.3-201ENST00000609955 700 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.57□□□□□ -2.32
COL18A1P39060 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.57□□□□□ -2.32
COL18A1P39060 Y_RNA.1-201ENST00000352915 104 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU6-1266P-201ENST00000362794 105 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU5F-3P-201ENST00000363767 117 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU6-38P-201ENST00000384085 107 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 MIR329-2-201ENST00000385029 84 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNA5SP25-201ENST00000410815 110 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL663109.1-201ENST00000411498 844 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.57□□□□□ -2.32
COL18A1P39060 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.57□□□□□ -2.32
COL18A1P39060 AC245047.7-201ENST00000440265 293 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 USP9YP29-201ENST00000445112 563 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.57□□□□□ -2.32
COL18A1P39060 RNU6-947P-201ENST00000516264 106 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC090049.2-201ENST00000550377 109 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 MIR4802-201ENST00000581881 80 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AC022432.1-201ENST00000595739 310 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 AL121757.2-201ENST00000611223 313 ntBASIC0.57□□□□□ -2.32
COL18A1P39060 RNU4-79P-201ENST00000362764 141 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 U3.8-201ENST00000363675 217 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RNU6-280P-201ENST00000364145 104 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 Y_RNA.378-201ENST00000365652 113 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 MIR608-201ENST00000384820 100 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
COL18A1P39060 EIF4E2P1-201ENST00000393781 255 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AL590002.1-201ENST00000406554 418 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RN7SKP142-201ENST00000411236 328 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC063976.4-201ENST00000421971 163 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC002429.1-201ENST00000437672 148 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 MTND3P16-201ENST00000452205 344 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 RPS3AP17-201ENST00000472594 777 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.56□□□□□ -2.32
COL18A1P39060 AC105758.1-201ENST00000506038 399 ntBASIC0.56□□□□□ -2.32
COL18A1P39060 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms