Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIG1P18858 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
LIG1P18858 SNORD32B-201ENST00000364460 84 ntBASIC3.56□□□□□ -1.84
LIG1P18858 Y_RNA.353-201ENST00000365440 108 ntBASIC3.56□□□□□ -1.84
LIG1P18858 SNORA12-201ENST00000391162 147 ntBASIC3.56□□□□□ -1.84
LIG1P18858 RNA5SP492-201ENST00000411330 114 ntBASIC3.56□□□□□ -1.84
LIG1P18858 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.56□□□□□ -1.84
LIG1P18858 AC245047.8-201ENST00000456455 284 ntBASIC3.56□□□□□ -1.84
LIG1P18858 RN7SL20P-201ENST00000488827 297 ntBASIC3.56□□□□□ -1.84
LIG1P18858 AC006445.1-201ENST00000491925 405 ntBASIC3.56□□□□□ -1.84
LIG1P18858 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.56□□□□□ -1.84
LIG1P18858 RNU6-971P-201ENST00000516920 106 ntBASIC3.56□□□□□ -1.84
LIG1P18858 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.56□□□□□ -1.84
LIG1P18858 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.56□□□□□ -1.84
LIG1P18858 MIR3200-201ENST00000580767 85 ntBASIC3.56□□□□□ -1.84
LIG1P18858 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.56□□□□□ -1.84
LIG1P18858 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LIG1P18858 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.56□□□□□ -1.84
LIG1P18858 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIG1P18858 Y_RNA.71-201ENST00000362892 104 ntBASIC3.55□□□□□ -1.84
LIG1P18858 RNU6-1305P-201ENST00000364353 104 ntBASIC3.55□□□□□ -1.84
LIG1P18858 Y_RNA.261-201ENST00000364631 102 ntBASIC3.55□□□□□ -1.84
LIG1P18858 SNORD116-14-201ENST00000383894 92 ntBASIC3.55□□□□□ -1.84
LIG1P18858 SNORD116-17-201ENST00000383929 92 ntBASIC3.55□□□□□ -1.84
LIG1P18858 RNU6-643P-201ENST00000384018 107 ntBASIC3.55□□□□□ -1.84
LIG1P18858 SNORD116-15-201ENST00000384445 92 ntBASIC3.55□□□□□ -1.84
LIG1P18858 SNORD116-19-201ENST00000384729 92 ntBASIC3.55□□□□□ -1.84
LIG1P18858 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.55□□□□□ -1.84
LIG1P18858 MIR1185-2-201ENST00000408687 86 ntBASIC3.55□□□□□ -1.84
LIG1P18858 RPL23AP83-201ENST00000434984 473 ntBASIC3.55□□□□□ -1.84
LIG1P18858 AL121914.1-201ENST00000450188 156 ntBASIC3.55□□□□□ -1.84
LIG1P18858 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.55□□□□□ -1.84
LIG1P18858 RNU7-197P-201ENST00000458836 62 ntBASIC3.55□□□□□ -1.84
LIG1P18858 RPS29P2-201ENST00000479278 136 ntBASIC3.55□□□□□ -1.84
LIG1P18858 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.55□□□□□ -1.84
LIG1P18858 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.55□□□□□ -1.84
LIG1P18858 AC112693.2-201ENST00000556538 232 ntBASIC3.55□□□□□ -1.84
LIG1P18858 MIR4724-201ENST00000579485 89 ntBASIC3.55□□□□□ -1.84
LIG1P18858 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
LIG1P18858 AC012640.5-201ENST00000623897 319 ntBASIC3.55□□□□□ -1.84
LIG1P18858 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.55□□□□□ -1.84
LIG1P18858 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.55□□□□□ -1.84
LIG1P18858 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LIG1P18858 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.54□□□□□ -1.84
LIG1P18858 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIG1P18858 RNU6-199P-201ENST00000362954 107 ntBASIC3.54□□□□□ -1.84
LIG1P18858 Y_RNA.229-201ENST00000364347 113 ntBASIC3.54□□□□□ -1.84
LIG1P18858 SNORD20-201ENST00000384550 80 ntBASIC3.54□□□□□ -1.84
LIG1P18858 MT-TT-201ENST00000387460 66 ntBASIC3.54□□□□□ -1.84
LIG1P18858 AC006461.1-201ENST00000412637 326 ntBASIC3.54□□□□□ -1.84
LIG1P18858 HSPE1P13-201ENST00000451143 297 ntBASIC3.54□□□□□ -1.84
LIG1P18858 RN7SL863P-201ENST00000462370 296 ntBASIC3.54□□□□□ -1.84
LIG1P18858 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.54□□□□□ -1.84
LIG1P18858 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.54□□□□□ -1.84
LIG1P18858 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.54□□□□□ -1.84
LIG1P18858 MIR3646-201ENST00000578301 84 ntBASIC3.54□□□□□ -1.84
LIG1P18858 LARP7P3-201ENST00000579888 337 ntBASIC3.54□□□□□ -1.84
LIG1P18858 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.54□□□□□ -1.84
LIG1P18858 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LIG1P18858 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LIG1P18858 AL159152.1-201ENST00000635019 2587 ntBASIC3.54□□□□□ -1.84
LIG1P18858 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
LIG1P18858 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIG1P18858 RNA5SP374-201ENST00000362939 125 ntBASIC3.53□□□□□ -1.84
LIG1P18858 RNU6-215P-201ENST00000365169 102 ntBASIC3.53□□□□□ -1.84
LIG1P18858 AL606845.1-201ENST00000404881 255 ntBASIC3.53□□□□□ -1.84
LIG1P18858 AC097463.2-201ENST00000421074 142 ntBASIC3.53□□□□□ -1.84
LIG1P18858 EIF4EP4-201ENST00000424916 578 ntBASIC3.53□□□□□ -1.84
LIG1P18858 AC114982.1-201ENST00000469402 321 ntBASIC3.53□□□□□ -1.84
LIG1P18858 HMGN2P9-201ENST00000476875 229 ntBASIC3.53□□□□□ -1.84
LIG1P18858 RNU6-1333P-201ENST00000516162 93 ntBASIC3.53□□□□□ -1.84
LIG1P18858 RNU7-115P-201ENST00000516433 55 ntBASIC3.53□□□□□ -1.84
LIG1P18858 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.53□□□□□ -1.84
LIG1P18858 TUG1_4.1-201ENST00000619464 181 ntBASIC3.53□□□□□ -1.84
LIG1P18858 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LIG1P18858 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.52□□□□□ -1.85
LIG1P18858 MIR367-201ENST00000362299 68 ntBASIC3.52□□□□□ -1.85
LIG1P18858 U8.7-201ENST00000364940 136 ntBASIC3.52□□□□□ -1.85
LIG1P18858 RNU6-728P-201ENST00000365375 104 ntBASIC3.52□□□□□ -1.85
LIG1P18858 Y_RNA.420-201ENST00000384043 110 ntBASIC3.52□□□□□ -1.85
LIG1P18858 RNY3P5-201ENST00000384127 102 ntBASIC3.52□□□□□ -1.85
LIG1P18858 Y_RNA.542-201ENST00000384641 111 ntBASIC3.52□□□□□ -1.85
LIG1P18858 SNORA20-201ENST00000384662 132 ntBASIC3.52□□□□□ -1.85
LIG1P18858 MIR15B-201ENST00000385045 98 ntBASIC3.52□□□□□ -1.85
LIG1P18858 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.52□□□□□ -1.85
LIG1P18858 RPL23AP7-203ENST00000449021 469 ntBASIC3.52□□□□□ -1.85
LIG1P18858 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.52□□□□□ -1.85
LIG1P18858 MRPS36P2-201ENST00000512569 299 ntBASIC3.52□□□□□ -1.85
LIG1P18858 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.52□□□□□ -1.85
LIG1P18858 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.52□□□□□ -1.85
LIG1P18858 RN7SKP43-201ENST00000516173 320 ntBASIC3.52□□□□□ -1.85
LIG1P18858 RNU6-1098P-201ENST00000516772 96 ntBASIC3.52□□□□□ -1.85
LIG1P18858 AL359881.1-201ENST00000602916 267 ntBASIC3.52□□□□□ -1.85
LIG1P18858 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LIG1P18858 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
LIG1P18858 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
LIG1P18858 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.52□□□□□ -1.85
LIG1P18858 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
LIG1P18858 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIG1P18858 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms