Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 SNORA28-201ENST00000606769 126 ntBASIC5.29□□□□□ -1.56
RNF39Q9H2S5 U4.6-201ENST00000621618 127 ntBASIC5.29□□□□□ -1.56
RNF39Q9H2S5 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.29□□□□□ -1.56
RNF39Q9H2S5 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
RNF39Q9H2S5 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
RNF39Q9H2S5 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
RNF39Q9H2S5 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
RNF39Q9H2S5 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 RNU6-833P-201ENST00000363486 107 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 RNU1-33P-201ENST00000364249 162 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 SNORD28B-201ENST00000390993 75 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 RNA5SP129-201ENST00000410276 118 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 AC016397.1-201ENST00000412463 242 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 RPS27P16-201ENST00000425758 201 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 CYCSP35-201ENST00000451978 304 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 SNORD108-201ENST00000459332 71 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 AC040958.1-201ENST00000561102 201 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 AC141846.1-201ENST00000568348 142 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 FAM27B-201ENST00000610601 213 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 MIR6853-201ENST00000619642 74 ntBASIC5.28□□□□□ -1.56
RNF39Q9H2S5 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
RNF39Q9H2S5 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 Y_RNA.537-201ENST00000384626 109 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 MIR141-201ENST00000384975 95 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 MIR136-201ENST00000385207 82 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 RNA5SP237-201ENST00000410414 113 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 RNA5SP310-201ENST00000459084 116 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 AC022726.1-201ENST00000587475 207 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 AL356218.2-201ENST00000605264 187 ntBASIC5.27□□□□□ -1.57
RNF39Q9H2S5 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.27□□□□□ -1.57
RNF39Q9H2S5 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.26□□□□□ -1.57
RNF39Q9H2S5 RN7SL354P-201ENST00000469282 294 ntBASIC5.26□□□□□ -1.57
RNF39Q9H2S5 SCARNA22-201ENST00000503991 125 ntBASIC5.26□□□□□ -1.57
RNF39Q9H2S5 AC099522.1-202ENST00000514718 367 ntBASIC5.26□□□□□ -1.57
RNF39Q9H2S5 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
RNF39Q9H2S5 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 RNU1-32P-201ENST00000363937 159 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 AC009969.1-201ENST00000438726 172 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 AL161788.1-201ENST00000441805 169 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 RNU6-92P-201ENST00000605893 104 ntBASIC5.25□□□□□ -1.57
RNF39Q9H2S5 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.25□□□□□ -1.57
RNF39Q9H2S5 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 MIR452-201ENST00000385020 85 ntBASIC5.24□□□□□ -1.57
RNF39Q9H2S5 CST2P1-201ENST00000425770 87 ntBASIC5.24□□□□□ -1.57
RNF39Q9H2S5 AL606517.2-201ENST00000442855 241 ntBASIC5.24□□□□□ -1.57
RNF39Q9H2S5 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 RNU6-274P-201ENST00000459566 107 ntBASIC5.24□□□□□ -1.57
RNF39Q9H2S5 IGKV1-32-201ENST00000519290 311 ntBASIC5.24□□□□□ -1.57
RNF39Q9H2S5 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
RNF39Q9H2S5 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.23□□□□□ -1.57
RNF39Q9H2S5 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF39Q9H2S5 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF39Q9H2S5 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
RNF39Q9H2S5 MIR545-201ENST00000385085 106 ntBASIC5.23□□□□□ -1.57
RNF39Q9H2S5 RNA5SP299-201ENST00000391203 116 ntBASIC5.23□□□□□ -1.57
RNF39Q9H2S5 MIR298-201ENST00000401212 88 ntBASIC5.23□□□□□ -1.57
RNF39Q9H2S5 ATP5J2P3-201ENST00000451550 258 ntBASIC5.23□□□□□ -1.57
RNF39Q9H2S5 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.23□□□□□ -1.57
RNF39Q9H2S5 RPL32P34-201ENST00000486380 400 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms