Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MIR561-201ENST00000385216 97 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 UQCRBP2-201ENST00000447827 297 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 SEPT14P8-201ENST00000508026 178 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC107222.1-201ENST00000510899 637 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 RNU6-1023P-201ENST00000516137 106 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 RNU6-586P-201ENST00000517265 104 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 MIR3668-201ENST00000582138 75 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC012433.1-201ENST00000588916 398 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC090425.1-201ENST00000610007 140 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 MIR6766-201ENST00000622641 72 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AC127459.3-201ENST00000624328 466 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 AL391987.6-201ENST00000305671 199 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNU4-90P-201ENST00000362773 141 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.237-201ENST00000364439 102 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNU1-91P-201ENST00000364746 163 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNA5SP126-201ENST00000365092 109 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNU6-20P-201ENST00000384106 107 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.541-201ENST00000384640 113 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 SNORA11.2-201ENST00000408318 127 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 MIR548H3-201ENST00000408771 118 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.602-201ENST00000410535 92 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC027124.2-201ENST00000428249 105 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC004386.2-201ENST00000441858 148 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC009238.1-201ENST00000442165 424 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC009237.6-201ENST00000446969 424 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC009237.7-201ENST00000447357 229 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 HSPE1P25-201ENST00000455484 251 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS53Q5VIR6 MTND1P19-201ENST00000511780 315 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNU6-1338P-201ENST00000516328 91 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.680-201ENST00000516441 93 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RNA5SP82-201ENST00000516707 92 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 DEFB131C-201ENST00000528817 165 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS53Q5VIR6 RRN3P3-201ENST00000549207 578 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC018448.1-201ENST00000552843 316 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 AC011373.1-201ENST00000607270 237 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 Z82209.1-201ENST00000422141 2135 ntBASIC2.72□□□□□ -1.97
VPS53Q5VIR6 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VPS53Q5VIR6 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.71□□□□□ -1.97
VPS53Q5VIR6 MIR410-201ENST00000362222 80 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 SNORA67.1-201ENST00000364749 141 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 RNU6-290P-201ENST00000365212 101 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 SNORA18.2-201ENST00000383865 132 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 SNORA80E-201ENST00000384744 137 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 MIR524-201ENST00000385242 87 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 SNORA3.2-201ENST00000408221 125 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC004866.1-201ENST00000411748 78 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 RNU6-625P-201ENST00000459412 107 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 SNORD53-201ENST00000579969 78 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 MIR3128-201ENST00000581957 66 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC005357.1-201ENST00000588399 301 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC005176.2-201ENST00000596933 147 ntBASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS53Q5VIR6 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.416-201ENST00000384014 113 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 RNU6-102P-201ENST00000384485 104 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 MIR221-201ENST00000385135 110 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 ELOCP21-201ENST00000412558 336 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 MTND4LP30-201ENST00000454092 297 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 DEFB108E-201ENST00000524692 240 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 AC091544.4-201ENST00000555268 342 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 SNORD11B-201ENST00000607707 90 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 AC090517.3-201ENST00000625170 141 ntBASIC2.7□□□□□ -1.98
VPS53Q5VIR6 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS53Q5VIR6 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.20-201ENST00000362479 113 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU6-1310P-201ENST00000384153 107 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.498-201ENST00000384460 102 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 Y_RNA.552-201ENST00000384665 112 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU6-21P-201ENST00000384710 107 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU6-907P-201ENST00000390924 102 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 SNORA12-201ENST00000391162 147 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RAB28P5-201ENST00000427490 651 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU2-44P-201ENST00000516795 194 ntBASIC2.69□□□□□ -1.98
VPS53Q5VIR6 RNU7-110P-201ENST00000516891 62 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms