Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU6-855P-201ENST00000410395 104 ntBASIC3.63□□□□□ -1.83
LIG1P18858 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG1P18858 RPL30P13-201ENST00000418873 348 ntBASIC3.63□□□□□ -1.83
LIG1P18858 RPL27AP5-201ENST00000469428 449 ntBASIC3.63□□□□□ -1.83
LIG1P18858 RNA5SP272-201ENST00000516095 111 ntBASIC3.63□□□□□ -1.83
LIG1P18858 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG1P18858 MIR7112-201ENST00000616126 65 ntBASIC3.63□□□□□ -1.83
LIG1P18858 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.63□□□□□ -1.83
LIG1P18858 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIG1P18858 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIG1P18858 Y_RNA.24-201ENST00000362508 103 ntBASIC3.62□□□□□ -1.83
LIG1P18858 SNORD114-7-201ENST00000362520 77 ntBASIC3.62□□□□□ -1.83
LIG1P18858 SNORA38.1-201ENST00000364172 131 ntBASIC3.62□□□□□ -1.83
LIG1P18858 MIR548B-201ENST00000385247 97 ntBASIC3.62□□□□□ -1.83
LIG1P18858 RNA5SP344-201ENST00000411081 104 ntBASIC3.62□□□□□ -1.83
LIG1P18858 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.62□□□□□ -1.83
LIG1P18858 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.62□□□□□ -1.83
LIG1P18858 SRIP1-201ENST00000489235 288 ntBASIC3.62□□□□□ -1.83
LIG1P18858 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.62□□□□□ -1.83
LIG1P18858 SCARNA8-201ENST00000515924 131 ntBASIC3.62□□□□□ -1.83
LIG1P18858 AC079598.5-201ENST00000547460 117 ntBASIC3.62□□□□□ -1.83
LIG1P18858 AL391903.3-201ENST00000612158 163 ntBASIC3.62□□□□□ -1.83
LIG1P18858 uc_338.14-201ENST00000613162 166 ntBASIC3.62□□□□□ -1.83
LIG1P18858 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.62□□□□□ -1.83
LIG1P18858 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.62□□□□□ -1.83
LIG1P18858 RNU4-11P-201ENST00000365287 132 ntBASIC3.61□□□□□ -1.83
LIG1P18858 Y_RNA.337-201ENST00000365312 102 ntBASIC3.61□□□□□ -1.83
LIG1P18858 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIG1P18858 Y_RNA.572-201ENST00000384757 98 ntBASIC3.61□□□□□ -1.83
LIG1P18858 MIR513C-201ENST00000401352 84 ntBASIC3.61□□□□□ -1.83
LIG1P18858 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.61□□□□□ -1.83
LIG1P18858 MTND4LP9-201ENST00000427694 174 ntBASIC3.61□□□□□ -1.83
LIG1P18858 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
LIG1P18858 SNORA70.12-201ENST00000516084 153 ntBASIC3.61□□□□□ -1.83
LIG1P18858 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.61□□□□□ -1.83
LIG1P18858 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.61□□□□□ -1.83
LIG1P18858 uc_338.25-201ENST00000613756 156 ntBASIC3.61□□□□□ -1.83
LIG1P18858 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.61□□□□□ -1.83
LIG1P18858 AC073346.2-201ENST00000624724 2058 ntBASIC3.61□□□□□ -1.83
LIG1P18858 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
LIG1P18858 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.6□□□□□ -1.83
LIG1P18858 RNU6-144P-201ENST00000383951 107 ntBASIC3.6□□□□□ -1.83
LIG1P18858 MIR586-201ENST00000385035 97 ntBASIC3.6□□□□□ -1.83
LIG1P18858 SNORA48.5-201ENST00000391143 135 ntBASIC3.6□□□□□ -1.83
LIG1P18858 SNORA26.7-201ENST00000391288 122 ntBASIC3.6□□□□□ -1.83
LIG1P18858 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AL139281.1-201ENST00000422120 335 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AC009414.1-201ENST00000427200 443 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AC244505.4-201ENST00000434905 287 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AC006028.1-201ENST00000438379 402 ntBASIC3.6□□□□□ -1.83
LIG1P18858 SSXP5-201ENST00000443473 287 ntBASIC3.6□□□□□ -1.83
LIG1P18858 UQCRHP3-201ENST00000451503 251 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AL137159.1-201ENST00000452808 512 ntBASIC3.6□□□□□ -1.83
LIG1P18858 RNU7-141P-201ENST00000459304 62 ntBASIC3.6□□□□□ -1.83
LIG1P18858 AC112771.1-201ENST00000463581 102 ntBASIC3.6□□□□□ -1.83
LIG1P18858 RN7SL504P-201ENST00000494496 287 ntBASIC3.6□□□□□ -1.83
LIG1P18858 SEM1P1-201ENST00000506694 209 ntBASIC3.6□□□□□ -1.83
LIG1P18858 RNU6-453P-201ENST00000516819 85 ntBASIC3.6□□□□□ -1.83
LIG1P18858 HSPE1P18-201ENST00000517602 280 ntBASIC3.6□□□□□ -1.83
LIG1P18858 MIR5680-201ENST00000577577 84 ntBASIC3.6□□□□□ -1.83
LIG1P18858 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.6□□□□□ -1.83
LIG1P18858 AL355596.1-201ENST00000565399 3996 ntBASIC3.6□□□□□ -1.83
LIG1P18858 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.59□□□□□ -1.83
LIG1P18858 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.59□□□□□ -1.83
LIG1P18858 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LIG1P18858 RNU6-1205P-201ENST00000363625 106 ntBASIC3.59□□□□□ -1.83
LIG1P18858 RNU6-969P-201ENST00000383900 105 ntBASIC3.59□□□□□ -1.83
LIG1P18858 MIR491-201ENST00000384877 84 ntBASIC3.59□□□□□ -1.83
LIG1P18858 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.59□□□□□ -1.83
LIG1P18858 SNORA25.12-201ENST00000516202 82 ntBASIC3.59□□□□□ -1.83
LIG1P18858 MIR5195-201ENST00000583555 115 ntBASIC3.59□□□□□ -1.83
LIG1P18858 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.59□□□□□ -1.83
LIG1P18858 AC025754.2-201ENST00000606491 432 ntBASIC3.59□□□□□ -1.83
LIG1P18858 MIR3651-201ENST00000630427 90 ntBASIC3.59□□□□□ -1.83
LIG1P18858 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
LIG1P18858 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIG1P18858 snoU2_19.1-201ENST00000362361 80 ntBASIC3.58□□□□□ -1.84
LIG1P18858 Y_RNA.127-201ENST00000363386 109 ntBASIC3.58□□□□□ -1.84
LIG1P18858 SNORA51.4-201ENST00000364993 124 ntBASIC3.58□□□□□ -1.84
LIG1P18858 MIR627-201ENST00000384979 97 ntBASIC3.58□□□□□ -1.84
LIG1P18858 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.58□□□□□ -1.84
LIG1P18858 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.58□□□□□ -1.84
LIG1P18858 RPL36AP48-201ENST00000485521 314 ntBASIC3.58□□□□□ -1.84
LIG1P18858 RNU6-1007P-201ENST00000516586 107 ntBASIC3.58□□□□□ -1.84
LIG1P18858 AC103810.1-201ENST00000579873 453 ntBASIC3.58□□□□□ -1.84
LIG1P18858 MIR3658-201ENST00000636291 56 ntBASIC3.58□□□□□ -1.84
LIG1P18858 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.58□□□□□ -1.84
LIG1P18858 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LIG1P18858 Y_RNA.172-201ENST00000363765 102 ntBASIC3.57□□□□□ -1.84
LIG1P18858 Y_RNA.218-201ENST00000364218 104 ntBASIC3.57□□□□□ -1.84
LIG1P18858 Y_RNA.273-201ENST00000364703 102 ntBASIC3.57□□□□□ -1.84
LIG1P18858 MIR539-201ENST00000365690 78 ntBASIC3.57□□□□□ -1.84
LIG1P18858 RNU6-1228P-201ENST00000391014 107 ntBASIC3.57□□□□□ -1.84
LIG1P18858 RN7SL807P-201ENST00000470923 297 ntBASIC3.57□□□□□ -1.84
LIG1P18858 RN7SKP57-201ENST00000517248 293 ntBASIC3.57□□□□□ -1.84
LIG1P18858 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.57□□□□□ -1.84
LIG1P18858 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LIG1P18858 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LIG1P18858 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIG1P18858 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms