Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CYP2C59P-201ENST00000457790 269 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 SNORA59A-201ENST00000459326 152 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXA3O43365 RNA5SP341-201ENST00000516261 117 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 RNU6-346P-201ENST00000516288 111 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 RNU6-1337P-201ENST00000516525 95 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AC027419.1-201ENST00000522976 328 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXA3O43365 AC004832.4-201ENST00000608952 331 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 Y_RNA.802-201ENST00000614892 130 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AC022149.2-201ENST00000621061 203 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 U2.22-201ENST00000636441 106 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 AL159152.1-201ENST00000635019 2587 ntBASIC2.65□□□□□ -1.99
HOXA3O43365 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXA3O43365 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXA3O43365 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.65□□□□□ -1.99
HOXA3O43365 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXA3O43365 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA3O43365 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA3O43365 AC009487.4-201ENST00000624969 3585 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 Y_RNA.75-201ENST00000362927 97 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 RNU6-1205P-201ENST00000363625 106 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 snoU2_19.4-201ENST00000364329 80 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 U8.7-201ENST00000364940 136 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 RNY1P5-201ENST00000383890 115 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 Y_RNA.412-201ENST00000384001 104 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 Y_RNA.572-201ENST00000384757 98 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA3O43365 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXA3O43365 HSPE1P21-201ENST00000438283 308 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 HSPE1P13-201ENST00000451143 297 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 AP001486.1-201ENST00000463339 476 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 RPS27AP9-201ENST00000477681 438 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 AL049873.1-201ENST00000480540 376 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA3O43365 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXA3O43365 Y_RNA.797-201ENST00000515977 94 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 RNA5SP490-201ENST00000517141 136 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 AC025647.1-201ENST00000517879 253 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 AC013412.1-201ENST00000610687 192 ntBASIC2.64□□□□□ -1.99
HOXA3O43365 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA3O43365 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXA3O43365 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXA3O43365 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA3O43365 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA3O43365 MIR422A-201ENST00000362286 90 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 Y_RNA.23-201ENST00000362496 106 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU1-23P-201ENST00000363361 144 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU6-271P-201ENST00000363858 105 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU6-743P-201ENST00000364151 106 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU6-407P-201ENST00000365280 104 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU6-1235P-201ENST00000384559 107 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 Y_RNA.580-201ENST00000391004 95 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 MIR1289-1-201ENST00000408836 144 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RNU6-498P-201ENST00000459468 107 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 AC117454.1-201ENST00000491120 168 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXA3O43365 RNA5SP20-201ENST00000515976 84 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 RN7SKP164-201ENST00000516138 266 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 AC107934.2-201ENST00000518653 310 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 PRELID2P1-201ENST00000552837 301 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXA3O43365 MIR4744-201ENST00000581563 82 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXA3O43365 AC068647.2-201ENST00000637380 353 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 MAPK10-362ENST00000641864 4484 ntBASIC2.63□□□□□ -1.99
HOXA3O43365 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA3O43365 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXA3O43365 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA3O43365 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA3O43365 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
HOXA3O43365 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
HOXA3O43365 Y_RNA.272-201ENST00000364696 102 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RNA5SP240-201ENST00000365355 128 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 Y_RNA.357-201ENST00000365487 109 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RNU6-969P-201ENST00000383900 105 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RNU6-144P-201ENST00000383951 107 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 SNORA19-201ENST00000384737 128 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RNA5SP293-201ENST00000410527 113 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RN7SL863P-201ENST00000462370 296 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 RPS26P55-201ENST00000471178 356 ntBASIC2.62□□□□□ -1.99
HOXA3O43365 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXA3O43365 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HOXA3O43365 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXA3O43365 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXA3O43365 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXA3O43365 AL356292.1-201ENST00000283110 373 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 RNU6-103P-201ENST00000363686 107 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 RNU6-1240P-201ENST00000365155 104 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 SNORD116-13-201ENST00000384408 92 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 MIR518C-201ENST00000384822 101 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 MIR526A2-201ENST00000390198 65 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HOXA3O43365 COTL1P1-201ENST00000422309 375 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 SEPT7P4-201ENST00000437076 306 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 AC092185.1-201ENST00000491371 97 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 SCARNA8-201ENST00000515924 131 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 RNU7-115P-201ENST00000516433 55 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 RNU6-453P-201ENST00000516819 85 ntBASIC2.61□□□□□ -1.99
HOXA3O43365 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 447.6 ms