Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 RNU6-1201P-201ENST00000384227 107 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 U8.15-201ENST00000390947 134 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC006445.1-201ENST00000491925 405 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 RN7SL810P-201ENST00000493031 276 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 CYP4A43P-201ENST00000568156 121 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 MIR4439-201ENST00000583746 80 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC113403.1-201ENST00000604910 193 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC006441.5-201ENST00000612680 209 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC140479.6-201ENST00000633535 357 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 AC095038.3-201ENST00000634439 195 ntBASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS9D1Q9Y2B5 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RNU6-743P-201ENST00000364151 106 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RNU6-438P-201ENST00000365561 103 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RNU6-616P-201ENST00000384353 107 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RNU11-5P-201ENST00000391216 129 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 NDUFB4P4-201ENST00000404822 243 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RPL23AP48-201ENST00000406913 488 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 MIR1179-201ENST00000408703 91 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 MIR1183-201ENST00000408856 89 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AL445646.1-201ENST00000431784 216 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC078918.1-201ENST00000498515 228 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AL592156.1-201ENST00000508758 304 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC004812.1-201ENST00000540773 146 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC006064.5-201ENST00000541782 248 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 ELOCP29-201ENST00000588193 334 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC096720.1-201ENST00000604441 183 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 MIR7702-201ENST00000621931 59 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 MFSD8-236ENST00000641509 4050 ntBASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS9D1Q9Y2B5 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 Y_RNA.547-201ENST00000384654 119 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 RNA5SP144-201ENST00000410846 116 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 AL022718.1-201ENST00000412004 84 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 AL512326.2-201ENST00000426359 151 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 FTH1P12-201ENST00000432137 551 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 PHBP16-201ENST00000446318 950 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 RN7SL481P-201ENST00000477764 299 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 RNU6-1291P-201ENST00000516591 104 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 AC078899.2-201ENST00000595282 212 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 Clostridiales-1.3-201ENST00000637703 147 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 AC010733.2-201ENST00000589496 5702 ntBASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
VPS9D1Q9Y2B5 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 Y_RNA.299-201ENST00000364973 94 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 SNORD66.1-201ENST00000391230 76 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 MIR1253-201ENST00000408273 105 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 RN7SKP200-201ENST00000410564 320 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 RPEP3-201ENST00000425462 676 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 RN7SL98P-201ENST00000462271 300 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 RN7SL271P-201ENST00000487601 295 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 AP003484.1-201ENST00000530974 250 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 AC090115.4-201ENST00000609970 188 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 AC018630.2-201ENST00000534866 2403 ntBASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
VPS9D1Q9Y2B5 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
VPS9D1Q9Y2B5 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 AL133412.1-201ENST00000380194 2992 ntBASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 MIR331-201ENST00000362302 94 ntBASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 RNA5SP502-201ENST00000362694 119 ntBASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 RN7SKP202-201ENST00000410439 330 ntBASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 AC069285.2-201ENST00000440210 275 ntBASIC4.27□□□□□ -1.73
VPS9D1Q9Y2B5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms