Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMD1Q9UGP4 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.43-201ENST00000362670 111 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 RNVU1-14-201ENST00000384770 164 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 MIR548A3-201ENST00000385297 97 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 RNU2-32P-201ENST00000411193 191 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 Z92545.1-201ENST00000411782 234 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 MTCO1P44-201ENST00000441935 243 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 SNORA59A-201ENST00000459326 152 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 MIR3117-201ENST00000584034 78 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 AC091178.2-201ENST00000584401 117 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 AL365205.2-201ENST00000594586 68 ntBASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
LIMD1Q9UGP4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.242-201ENST00000364473 110 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 SNORD58C-201ENST00000365223 64 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.346-201ENST00000365385 112 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 MIR218-2-201ENST00000385006 110 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 MIR634-201ENST00000385208 97 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 NDUFB4P4-201ENST00000404822 243 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 Y_RNA.617-201ENST00000410920 90 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 AC123900.1-201ENST00000420390 96 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 AC106707.2-201ENST00000484182 374 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 CKS1BP2-201ENST00000497342 240 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 SNORD33.1-201ENST00000516213 88 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 RNU7-143P-201ENST00000516781 65 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 AC108081.1-201ENST00000604358 221 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 U6.73-201ENST00000619194 103 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 MIR7975-201ENST00000619350 68 ntBASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIMD1Q9UGP4 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 SNORD6-201ENST00000365444 73 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 AC063976.4-201ENST00000421971 163 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 AC025750.2-201ENST00000442609 450 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 CYCSP35-201ENST00000451978 304 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 AL133162.1-201ENST00000463228 453 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 AP001486.1-201ENST00000463339 476 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 RN7SL585P-201ENST00000470538 280 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 SEM1P1-201ENST00000506694 209 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 RNU6-856P-201ENST00000516959 98 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 YPEL5P3-201ENST00000547227 352 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 MIR3613-201ENST00000579844 87 ntBASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
LIMD1Q9UGP4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.76
LIMD1Q9UGP4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
LIMD1Q9UGP4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 SNORD116-21-201ENST00000384507 92 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AL139247.1-201ENST00000422768 325 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC006028.1-201ENST00000438379 402 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AL161788.1-201ENST00000441805 169 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 U3.44-201ENST00000458938 192 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 RPL21P10-201ENST00000463521 490 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 RPS26P45-201ENST00000471748 340 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC093259.1-201ENST00000509755 300 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 RNU6-504P-201ENST00000516568 104 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 SCARNA14-201ENST00000516903 136 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AL121890.5-201ENST00000620848 304 ntBASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
LIMD1Q9UGP4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 RNA5SP399-201ENST00000364003 117 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 Y_RNA.332-201ENST00000365271 113 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 MIR95-201ENST00000385072 81 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 FO393413.1-201ENST00000402892 195 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 RPS15AP28-201ENST00000435088 386 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 RNU6-1096P-201ENST00000517089 102 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 RNU1-104P-201ENST00000517280 175 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 MIR3199-1-201ENST00000582434 88 ntBASIC4.07□□□□□ -1.76
LIMD1Q9UGP4 AC004832.5-201ENST00000608677 401 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms