Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 MTND4LP30-201ENST00000454092 297 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 AC016925.1-201ENST00000458303 298 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 AC012433.1-201ENST00000588916 398 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 AC013412.1-201ENST00000610687 192 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 AL590240.4-201ENST00000616908 390 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 U4atac.1-201ENST00000618345 95 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 snoZ196.1-201ENST00000625269 89 ntBASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.15□□□□□ -1.91
CCDC113Q9H0I3 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 SNORA25.1-201ENST00000362326 128 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 SNORA38-201ENST00000363946 132 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 RNU6-454P-201ENST00000364292 107 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 SNORA20.1-201ENST00000364790 130 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 RNU6-326P-201ENST00000365480 107 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 RNU6-418P-201ENST00000384035 107 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 MIR548H3-201ENST00000408771 118 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 RNU6-57P-201ENST00000411348 103 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 AC016717.1-201ENST00000448918 286 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 SERF1AP1-201ENST00000514575 187 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 MIR3128-201ENST00000581957 66 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CCDC113Q9H0I3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.54-201ENST00000362766 105 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 RNU6-1266P-201ENST00000362794 105 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 RNU1-109P-201ENST00000383960 147 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 AC024067.1-201ENST00000426199 223 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 RNU7-26P-201ENST00000458980 63 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 AC093259.1-201ENST00000509755 300 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 SNORA4.4-201ENST00000515921 135 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 RN7SKP132-201ENST00000516001 208 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 AC079600.2-201ENST00000550076 130 ntBASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC113Q9H0I3 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 U3.40-201ENST00000408706 208 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 AC123900.1-201ENST00000420390 96 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 RNA5SP367-201ENST00000516557 118 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 RNU2-12P-201ENST00000517216 168 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 PRELID2P1-201ENST00000552837 301 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 MIR3684-201ENST00000579779 74 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.12□□□□□ -1.91
CCDC113Q9H0I3 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AC245060.5-201ENST00000610778 3293 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 RNU1-35P-201ENST00000362782 153 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.352-201ENST00000365439 102 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.478-201ENST00000384358 107 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.518-201ENST00000384552 113 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 MIR592-201ENST00000384959 97 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AL139095.1-201ENST00000404326 391 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 RNU2-48P-201ENST00000410694 191 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 RNA5SP344-201ENST00000411081 104 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AC105272.1-201ENST00000438604 198 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 MRPS10P1-201ENST00000448483 130 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AC018868.1-201ENST00000491307 315 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.673-201ENST00000516306 88 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AL512605.2-201ENST00000592972 256 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 MIR7106-201ENST00000612419 65 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 AC127459.3-201ENST00000624328 466 ntBASIC3.11□□□□□ -1.91
CCDC113Q9H0I3 SNORD27-201ENST00000363981 72 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU6-1235P-201ENST00000384559 107 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.562-201ENST00000384695 113 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU6-1248P-201ENST00000391096 64 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU6-1199P-201ENST00000411249 104 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 PRELID3BP1-201ENST00000457142 540 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU6-498P-201ENST00000459468 107 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU6-966P-201ENST00000516479 104 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RNU2-34P-201ENST00000516534 121 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.1□□□□□ -1.91
CCDC113Q9H0I3 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 RNU6-379P-201ENST00000363813 104 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.329-201ENST00000365209 107 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.332-201ENST00000365271 113 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 Y_RNA.416-201ENST00000384014 113 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 SRIP3-201ENST00000413200 219 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 AC008134.1-201ENST00000420943 193 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 AC139712.2-201ENST00000424302 339 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 RPS29P6-201ENST00000438196 145 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 RNU6-221P-201ENST00000459541 99 ntBASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC113Q9H0I3 RNU6-1023P-201ENST00000516137 106 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms