Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 TSPY5P-201ENST00000426936 936 ntBASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 YBX1P2-201ENST00000489612 999 ntBASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 AL353719.1-201ENST00000566847 864 ntBASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 AL031432.5-201ENST00000641059 760 ntBASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHGA3Q9Y5H0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 AC141257.4-201ENST00000634557 245 ntBASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 AC136944.6-201ENST00000634818 245 ntBASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHGA3Q9Y5H0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 AL031133.1-201ENST00000406807 723 ntBASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDHGA3Q9Y5H0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA3Q9Y5H0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
PCDHGA3Q9Y5H0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA3Q9Y5H0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHGA3Q9Y5H0 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.34■□□□□ 0.53
PCDHGA3Q9Y5H0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms