Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.87■■□□□ 1.09
CTDP1Q9Y5B0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTDP1Q9Y5B0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 AC112907.2-201ENST00000448639 330 ntBASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 IER3-202ENST00000376377 1350 ntBASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CTDP1Q9Y5B0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 MCCD1P1-208ENST00000445732 328 ntBASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 KRT18P38-201ENST00000449496 1282 ntBASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CTDP1Q9Y5B0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 GPAT2P1-201ENST00000444924 1672 ntBASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 FAM86EP-206ENST00000510506 987 ntBASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CTDP1Q9Y5B0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDP1Q9Y5B0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDP1Q9Y5B0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CTDP1Q9Y5B0 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
CTDP1Q9Y5B0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms