Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.33■□□□□ 0.85
SIX2Q9NPC8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SIX2Q9NPC8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 AL499627.1-201ENST00000569373 2188 ntBASIC20.32■□□□□ 0.84
SIX2Q9NPC8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 AP000692.2-201ENST00000608391 879 ntBASIC20.32■□□□□ 0.84
SIX2Q9NPC8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.32■□□□□ 0.84
SIX2Q9NPC8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 RPS2P55-201ENST00000397318 883 ntBASIC20.31■□□□□ 0.84
SIX2Q9NPC8 AC107956.1-201ENST00000494359 873 ntBASIC20.31■□□□□ 0.84
SIX2Q9NPC8 AC116562.2-201ENST00000507042 360 ntBASIC20.31■□□□□ 0.84
SIX2Q9NPC8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 AC113410.3-201ENST00000623366 203 ntBASIC20.31■□□□□ 0.84
SIX2Q9NPC8 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SIX2Q9NPC8 FSCN1P1-201ENST00000568912 1481 ntBASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AC126763.1-201ENST00000552015 2118 ntBASIC20.3■□□□□ 0.84
SIX2Q9NPC8 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AL135905.2-201ENST00000584934 1404 ntBASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 UBE2SP1-201ENST00000450587 669 ntBASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.3■□□□□ 0.84
SIX2Q9NPC8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.29■□□□□ 0.84
SIX2Q9NPC8 AC233702.5-201ENST00000584107 538 ntBASIC20.29■□□□□ 0.84
SIX2Q9NPC8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms