Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 AC093484.2-201ENST00000580996 2166 ntBASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 AL512353.2-201ENST00000448759 1962 ntBASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PAAF1Q9BRP4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
PAAF1Q9BRP4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 LINC01311-201ENST00000565162 1445 ntBASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 FEM1AP3-201ENST00000403722 1741 ntBASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 ZNF444P1-201ENST00000559497 298 ntBASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 AC008556.1-201ENST00000610908 2040 ntBASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PAAF1Q9BRP4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 RCC2P3-201ENST00000418112 1537 ntBASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 RASA4DP-201ENST00000460726 1199 ntBASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 VENTXP5-201ENST00000523979 775 ntBASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 AL136038.3-201ENST00000561909 1096 ntBASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PAAF1Q9BRP4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 AC141586.3-201ENST00000562166 1838 ntBASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 AL032819.2-201ENST00000624543 2162 ntBASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PAAF1Q9BRP4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 SEC1P-202ENST00000473944 940 ntBASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 AC093458.2-201ENST00000623150 629 ntBASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms