Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
COL12A1Q99715 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.54■□□□□ 0.24
COL12A1Q99715 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.54■□□□□ 0.24
COL12A1Q99715 AC034105.1-201ENST00000563488 319 ntBASIC16.54■□□□□ 0.24
COL12A1Q99715 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.54■□□□□ 0.24
COL12A1Q99715 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL12A1Q99715 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.54■□□□□ 0.24
COL12A1Q99715 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL12A1Q99715 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.54■□□□□ 0.24
COL12A1Q99715 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.54■□□□□ 0.24
COL12A1Q99715 AC012645.4-201ENST00000610691 1061 ntBASIC16.54■□□□□ 0.24
COL12A1Q99715 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL12A1Q99715 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 ZNF259P1-201ENST00000407656 1365 ntBASIC16.54■□□□□ 0.24
COL12A1Q99715 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.54■□□□□ 0.24
COL12A1Q99715 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL12A1Q99715 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.54■□□□□ 0.24
COL12A1Q99715 SCARNA2-201ENST00000458748 420 ntBASIC16.54■□□□□ 0.24
COL12A1Q99715 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.54■□□□□ 0.24
COL12A1Q99715 AL356488.2-201ENST00000602755 427 ntBASIC16.54■□□□□ 0.24
COL12A1Q99715 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.53■□□□□ 0.24
COL12A1Q99715 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
COL12A1Q99715 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.53■□□□□ 0.24
COL12A1Q99715 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.53■□□□□ 0.24
COL12A1Q99715 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL12A1Q99715 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
COL12A1Q99715 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.53■□□□□ 0.24
COL12A1Q99715 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.53■□□□□ 0.24
COL12A1Q99715 AP006288.1-201ENST00000446065 395 ntBASIC16.53■□□□□ 0.24
COL12A1Q99715 COX20P2-201ENST00000452636 358 ntBASIC16.53■□□□□ 0.24
COL12A1Q99715 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.53■□□□□ 0.24
COL12A1Q99715 FAM215A-202ENST00000632077 792 ntBASIC16.53■□□□□ 0.24
COL12A1Q99715 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.53■□□□□ 0.24
COL12A1Q99715 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL12A1Q99715 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL12A1Q99715 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.52■□□□□ 0.24
COL12A1Q99715 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.52■□□□□ 0.24
COL12A1Q99715 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.52■□□□□ 0.24
COL12A1Q99715 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.52■□□□□ 0.24
COL12A1Q99715 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL12A1Q99715 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.52■□□□□ 0.23
COL12A1Q99715 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.52■□□□□ 0.23
COL12A1Q99715 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.52■□□□□ 0.23
COL12A1Q99715 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.52■□□□□ 0.23
COL12A1Q99715 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL12A1Q99715 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AC145285.3-201ENST00000564603 959 ntBASIC16.51■□□□□ 0.23
COL12A1Q99715 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.51■□□□□ 0.23
COL12A1Q99715 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL12A1Q99715 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL12A1Q99715 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.51■□□□□ 0.23
COL12A1Q99715 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL12A1Q99715 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
COL12A1Q99715 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.51■□□□□ 0.23
COL12A1Q99715 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.51■□□□□ 0.23
COL12A1Q99715 DNAJB3-201ENST00000446806 729 ntBASIC16.51■□□□□ 0.23
COL12A1Q99715 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.51■□□□□ 0.23
COL12A1Q99715 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.51■□□□□ 0.23
COL12A1Q99715 BNIP3P18-201ENST00000593976 575 ntBASIC16.51■□□□□ 0.23
COL12A1Q99715 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.51■□□□□ 0.23
COL12A1Q99715 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms